These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1219 fasta sequence [AGTTATCAAGTATCACTTCTAAATTCACCGCGGTGGTAAAAAAACGTCTATCGCAAAATCTCAATCAGGGACATCATCTGTCCCTGAGATGCACCAGACACACTGTGAGACATAAAATACTTCACCTATCCTGGCATCCAAAGAAATTCCTTACGGTAGCTATATCAGGCAATCGGTTGTTTCTTGTTTCAGGTCAGCCGACATTTAGTGATACATTACCTTCACAGAAGGATTCGAGTCACTGCTCTTCCTGTTTATCTAAGTCAACTGATGATGAGAACAACATACCTAGTGGACATTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGGGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAATGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGATTTTTCCTACCCATTTTTCCACTTTACAATACCTACTTATTTTAAGCTTGATTGTGTTTCATTTGCATAAGATTTGCGTGCCTTTACAGTACAAATTATTGTAATTGAAATGGAAGTATTGTAAATCACTGACTGGAAATGTTTTCCATAGATTGTATTCCATTCCAAAAGTATAACGTGTATTTTTCGTGCATTTCTAATTTAGCATAAATTA] [+] EMBL CD202408 [AGTTATCAAGTATCACTTCTAAATTCACCGCGGTGGTAAAAAAACGTCTATCGCAAAATCTCAATCAGGGACATCATCTGTCCCTGAGATGCACCAGACACACTGTGAGACATAAAATACTTCACCTATCCTGGCATCCAAAGAAATTCCTTACGGTAGCTATATCAGGCAATCGGTTGTTTCTTGTTTCAGGTCAGCCGACATTTAGTGATACATTACCTTCACAGAAGGATTCGAGTCACTGCTCTTCCTGTTTATCTAAGTCAACTGATGATGAGAACAACATACCTAGTGGACATTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGGGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCT ] [+] EMBL CD080719 [ ctcggcTCGAGGAACTGCTCTTCCTGTTTATCTAAGTCAACTGATGATGAGAACAACATACCTACTGGACATTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGGGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACANACAATCTCT ] [+] EMBL AW017026 [ TCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTT ] [-] EMBL CD194522 [ CTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGTGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAATGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGATTTTTCCTAC ] [-] EMBL CD074644 [ GTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGGGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAATGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGATTTTTCCTACCCATTTTTCCACTTTACAATACCTACTTATTTTAAGCTTGATTGTGTTTCATTTGCATAAGATTTGCGTGCCTTTACAGTACAAATTATTGTAATTGAAATGGAAGTATTGTAAATCACTGACTGGAAATGTTTTCCATAGATTGTATTCCATTCCAAAAGTATAACGTGTATTTTTCGTGCATTTCTAATTTAGCATAAATTA] consensusID : consensus_9046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1013 fasta sequence [CTGAAGATCCAAGTCTTTCACAAAATCTGGGATTTTTCGCTGAGTGTTATTGCAAGTTTATCAGATTTTCGCTTCGGTCATACTGGAAATTATCTTTTAGCCAGAGATTATTTAACATTGAAAATTTGGGATATGAGAATGGGCGATCGACCGTGTGAAATTTATTCAGTTTATGAACCATTTCGATCAC-A-ACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTCTGATGATGATAGGTATGCAATAACGGGTTCTTACGGCAATCTCTTTCATATATTTGACCGTCACAATGGCTCTGATTGGTTGTATGACCTTGACGACTCAAGCAATCCTTACGACACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTTTATGTCTCCCGATGATCCTATTGGAAGTCGGTTAGGTTTATCTTCAATTTTCGTAGCACCATTGGATGCTGTGGAAGCTCTCTTTCCAGAAACTACAAGTCAAACCAGTTCGCATAGCAGCTGTAGTGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTTAGAGGTATCACCTGGCAGAACAAAGCTATCTAACTGTCAACTAGATGATCTCAACCCTCCAGAGAATACTCCATCAGCACCCCCAACTGGTTCTAAGCGTCGAGAGCAAATCCTTCCTTCTCGTACTAATAATTCTACTGATTCTCATTGTGCTGTACAAAGTGAACACGAAAAATCCCGTAATTGTCACCACAAAAGTAAACATCGTCATCATAACAGGATCTTTCCACATGACATGGTAGAAAAATGTGGATACGGTGTTAGTTCTTCTTGCACCGTACCGAACTCAAATGATGGTCATGAGTTATCAAGTATCATTCTAAATTCACCGCCTGGTAAAAAAACGTCTATCGCAGAATCTCAATCAGGGACATCAACTGTCCCTGNGATGCACCAGATACACTGTCGACATANAATACTTCACCTATCCTG] [+] EMBL CD064757 [CTGAAGATCCAAGTCTTTCACAAAATCTGGGATTTTTCGCTGAGTGTTATTGCAAGTTTATCAGATTTTCGCTTCGGTCATACTGGAAATTATCTTTTAGCCAGAGATTATTTAACATTGAAAATTTGGGATATGAGAATGGGCGATCGACCGTGTGAAATTTATTCAGTTTATGAACCATTTCGATCACGAGACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTCTGATGATGATAGGTATGCAATAACGGGTTCTTACGGCAATCTCTTTCATATATTTGACCGTCACAATGGCTCTGATTGGTTGTATGACCTTGACGACTCAAGCAATCCTTACGACACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTTTATGTCTCCCGATGATCCTATTG ] [+] EMBL CD189381 [ GAATGGGCGATCGACCGTGTGAAATTTATTCAGTTCATGAACCATTTCGATCAC A ACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTCTGATGATGATAGGTATGCAATAACGGGTTCTTACGGCAATCTCTTTCATATATTTGACCGTCACAATGGCTCTGATTGGTTGTATGACCTTGACGACTCAAGCAATCCTTACAACACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTTTATGTCTCCCGATGATCCTATTGGAAGTCGGTTAGGTTTATCTTCAATTTTCGTAGCACCATTGGATGCTGTGGAAGCTCTCTTTCCAGAAACTACAAGTCAAACCAGTTCGCATAGCAGCTGTAGTGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTT ] [+] EMBL CD148714 [ TGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTTAGAGGTATCACCTGGCAGAACAAAGCTATCTAACTGTCAACTAGATGATCTCAACCCTCCAGAGAATACTCCATCAGCACCCCCAACTGGTTCTAAGCGTCGAGAGCAAATCCTTCCTTCTCGTACTAATAATTCTACTGATTCTCATTGTGCTGTACAAAGTGAACACGAAAAATCCCGTAATTGTCACCACAAAAGTAAACATCGTCATCATAACAGGATCTTTCCACATGACATGGTAGAAAAATGTGGATACGGTGTTAGTTCTTCTTGCACCGTACCGAACTCAAATGATGGTCATGAGTTATCAAGTATCATTCTAAATTCACCGCCTGGTAAAAAAACGTCTATCGCAGAATCTCAATCAGGGACATCAACTGTCCCTGNGATGCACCAGATACACTGTCGACATANAATACTTCACCTATCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9046#0 AGTTATCAAGTATCACTTCTAAATTCACCGCGGTGGTAAAAAAACGTCTATCGCAAAATC 60 consensus_9046#1 ---------------------------------CTGAAGATCCAAGTCTTTCACAAAATC 27 * * * * **** ** ******* consensus_9046#0 TCAATCAGGGACATCATCTGTCCCTGAGATGCACCAGACACACTGTGAGACATAAAATAC 120 consensus_9046#1 T------GGGA-----TTTTTCGCTGAG-TGTTATTGCAAGTTTATCAGATTTT---CGC 72 * **** * * ** ***** ** * * * * *** * * consensus_9046#0 TTCACCTATCCTGGCATCCAAAGAAATTCCTTACGGTAGCTATATCAGGCAATCGGTTGT 180 consensus_9046#1 TTCGGTCATACTGGAAATTATCTTTTAGCCAGAGATTATTTAACATTGAAAAT---TTGG 129 *** ** **** * * ** * ** ** * *** *** consensus_9046#0 TTCTTGTTTCAGGTCAGCCGACATTTAGTGATACATTACCTTCACAGAAGGATTCGAGTC 240 consensus_9046#1 GATATGAGAATGGGCGATCGACCGTGTGAAATTTATTCAGTTTAT-GAACCATTTCGATC 188 ** ** * **** * * ** *** ** * *** *** ** consensus_9046#0 ACTGCTCTTCCTGTT-TATCTAAGTCA-ACTGATGATGAGAACAACATACCTAGTGGACA 298 consensus_9046#1 ACAACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTC 248 ** ** * **** *** ** * * ** * *** ** * ** * * * consensus_9046#0 TTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTC 358 consensus_9046#1 TGATGATGATAGGTATGCA---ATAACGGGTTC--TTACGGCAATCTCTTTCATATATTT 303 * *** * ** * ** **** * * * ** * ** ** *** * ** consensus_9046#0 AAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTC 418 consensus_9046#1 GACCGTCACAATGGCT--------CTGATTG-GTTGT-ATGACCTTGACGACTCAAGCAA 353 * ** * * *** * ** ** * ** * ** ** **** consensus_9046#0 GGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTT 478 consensus_9046#1 TCCTTACGA---CACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTT 410 * * * * * ** ** ** * * *** * * *** ** *** consensus_9046#0 TCT---TCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGA 535 consensus_9046#1 TATGTCTCCCGATGATCCTATTGGAAGTCGGTTAGGTTTATCTTCAATTTTCGTAGC--A 468 * * *** **** * ** * * ** * * * ** *** ** * *** * consensus_9046#0 CCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTC 595 consensus_9046#1 CCAT-----TGGATGCTGTGGA-AGCTCTCTTTCCAGAAACTAC-AAGTCAAACCAGTTC 521 **** * * ** * * * *** * * ** * * * ***** consensus_9046#0 ---TGACCGGAATAGTGAAAA-AGTTCCATGTATAAATT---CCTTGTTTCCATCATCAA 648 consensus_9046#1 GCATAGCAGCTGTAGTGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTT 581 * * * ****** ** * * * ***** * * * *** * ** * consensus_9046#0 GAGAAACATTCTCAACTAATTTGAACGATGTTTTACAAT-GATAATGCTTTTCCTACCAT 707 consensus_9046#1 -AGAGGTATCACCTGGCAGAACAAA-GCTATCTAACTGTCAACTAGATGATCTCAACCCT 639 *** ** * * ** * * * * ** * * * * * *** * consensus_9046#0 TTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTC-ATCTCAGGGTTGACA 766 consensus_9046#1 CCAGAGAATACTCCAT-CAGCACCCCCAACTGGTTCTAAGCGTCGAGAGCAAATCCTTCC 698 ** * *** * * * * ** * * * * ** * ** * consensus_9046#0 TATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATC 826 consensus_9046#1 TTCTCGTACTAATAATTCTACTGATTCTCATTGTGCTGTACAAAGTGAACACGAAAAATC 758 * * * ** **** * *** * * ** ** * * *** consensus_9046#0 TCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACA 886 consensus_9046#1 CCGTAATTGTCACCACAAAAGTA----AACATCGTCATCATAACAGGATCTTTCCACATG 814 * * * * *** ** ** * ***** ** ** * consensus_9046#0 CATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAA 946 consensus_9046#1 -ACAT-------GGTAGAAAAATGTG-GATACGGTGTTAGTTCTTCTTGCACCGTACCGA 865 * ** ** *** * * ** * * * * * * * * **** * consensus_9046#0 TGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGAT 1006 consensus_9046#1 ACTCAAATGATGGTCATGAGTTATCAAG-TATCATTCTAAATTCACCGCCTGGTAAAAAA 924 * * * **** * * * *** *** * * ** * * consensus_9046#0 TTTTCCTACCCATTTTTCCACTTTACAATACCTACTTATTTTAAGCTTGATTG--TGTTT 1064 consensus_9046#1 ACGTCTATCGCAGAATCTCAATCAGGGACATCAACTGTCCCTGNGATGCACCAGATACAC 984 ** * ** * ** * * * * *** * * * * * consensus_9046#0 CATTTGCATAAGATTTGCGTGCCTTTACAGTACAAATTATTGTAATTGAAATGGAAGTAT 1124 consensus_9046#1 TGTCGACATANAATACTT-CACCTATCCTG------------------------------ 1013 * **** ** *** * * * consensus_9046#0 TGTAAATCACTGACTGGAAATGTTTTCCATAGATTGTATTCCATTCCAAAAGTATAACGT 1184 consensus_9046#1 ------------------------------------------------------------ consensus_9046#0 GTATTTTTCGTGCATTTCTAATTTAGCATAAATTA 1219 consensus_9046#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||