These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1110 fasta sequence [GTCTCTTCTAACTCAGTACCACCTGTTCAAGGAAACGGACGCCCCGTCCGTAGTGTTCAGAAGAAACAAAATGCTACATCTCAATCCAACGGTTCCTGTGCAACCTGGAGTCACTGGCCTGGGAACTGGGGTTCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCAAATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAGTGGGTTTTCTAACGTTTATTGTATTTGTAATCTCCGATGCCTTTTTACCGTATGACTAAGAACTCTTATGAGTTCATTAGTTGCATCATTTTTATCCATTATCCTTCTCATATTACATTTTCGCACGTAATTTTGTCTTATTCGTTCTTAGAGTTGGATATTGACTAGTTGTCTAAATCACTACTAACTTTGTAATTTATCATCTGATTTCCCAGTTAATACCGTAGGTTTCTTTATGTAAGTTAATTTACGCTCACATATTANGGAAATA] [+] EMBL CD178768 [GTCTCTTCTAACTCAGTACCACCTGTTCAAGGAAACGGACGCCCCGTCCGTAGTGTTCAGAAGAAACAAAATGCTACATCTCAATCCAACGGTTCCTGTGCAACCTGGAGTCACTGGCCTGGGAACTGGGGTTCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCAAATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCA ] [-] EMBL CD183253 [ TCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCAAATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACA ] [+] EMBL CD190209 [ ACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTC ] [+] EMBL CD164784 [ TCAACTAGCTCCACCTCCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAGTGGGTTTTCTAACGTTTATTGTATTTGTAATCTCCGATGCCTTTTTACCGTATGACTAAGAACTCTTATGAGTTCATTAGTTGCATCATTTTTATCCATTATCCTTCTCATATTACATTTTCGCACGTAATTTTGTCTTATTCGTTCTTAGAGTTGGATATTGACTAGTTGTCTAAATCACTACTAACTTTGTAATTTATCATCTGATTTCCCAGTTAATACCGTAGGTTTCTTTATGTAAGTTAATTTACGCTCACATATTANGGAAATA] [-] EMBL CD139055 [ CAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATA ] [-] EMBL CD148110 [ AATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGA ] consensusID : consensus_9259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [TTCTCTCGATCCGTTGGAGCAATTCCATCGACTCTTGGAATCACTCAGCTGCTGCTGGCCTTTGCCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGATCCTGGTGGCTGGAATCACGGGAATGCCGAATCACGTTCTCTGAACAGGCAATGGACAGGACCTACTTCCTACGATATTCCAGGGCCTAAGCCGCCCAACCATTTGGCTGCCAGCTATATTAACGAAGCACTACCTGCACATCAAAATGGAGCTTCTATATCTGTGATGGCAACAGCTGCTGCTATCGGTCTTGGCAACTCCCCACGTCGTCCACCGATGCCTCATTGATCATCGACAGGATCTGAAGATCCAAGTAGTATAAGATTACATGAATCATTGTACAGAACGTCTGCTGACTGCAATCTTTCTTCTACTCGTGCCGCAGCACCAAAGCCAGCTGGTCTCAA] [+] EMBL CD188738 [TTCTCTCGATCCGTTGGAGCAATTCCATCGACTCTTGGAATCACTCAGCTGCTGCTGGCCTTTGCCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGATCCTGGTGGCTGGAATCACGGGAATGCCGAATCACGTTCTCTGAACAGGCAATGGACAGGACCTACTTCCTACGATATTCCAGGGCCTAAGCCGCCCAACCATTTGGCTGCCAGCTATATTAACGAAGCACTACCTGCACATCAAAATGGAGCTTCTATATCTGTGATGGCAACAGCTGCTGCTATCGGTCTTGGCAACTCCCCACGTCGTCCACCGATGCCTCATTGATCATCGACAGGATCTGAAGATCCAAGTAGTATAAGATTACATGAATCATTGTACAGAACGTCTGCTGACTGCAATCTTTCTTCTACTCGTGCCGCAGCACCAAAGCCAGCTGGTCTCAA] consensusID : consensus_9259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence [TAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCNTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGG-TGTCCACCGATGCCTCATTGGTCATCAACAGAATCTGTAGATCCAAGTAATATAAAATTAAATGAATCATTGTACAGAACGTCAGCTGGTGGCTATCTTTCTTTTACTCGTGGCGCAGCACCAAATCCACATGGTTTCAATTAATCCCATCCAGGTACACTTGTTCCAAATGGTTTACTCTTCGGTGATTGGTGTTGTGGTATGCGTACAAATAAGATAGGTTCATCAAGTGTTGTGTGTAACAGCA] [-] EMBL CD127375 [TAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCNTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGG TGTCCACCGATGCCTCATTGGTCATCAACAGAATCTGTAGATCCAAGTAATATAAAATTAAATGAATCATTGTACAGAACGTCAGCTGGTGGCTATCTTTCTTTTACTCGTGGCGCAGCACCAAATCCACATGGTTTCAATTAATCCCATCCAGGTACACTTGTTCCAAATGGTTTACTCTTCGGTGATTGGTGTTGTGGTATGCGTACAAATAAGATAGGTTCATCAAGTGTTGTGTGTAACAGCA] [+] EMBL CD072383 [ CAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCGTTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAGTAATATAAAATTAAATGAATCATTGTACAGAACGTCTGCTGGTTGCAATCTTTCTTCTACTCGTGGCGCAGCACCANATCCAGCTGGTCTCAATTttna ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9259#0 GTCTCTTCTAACTCAGTACCACCTGTTCAAGGAAACGGACGCCCCGTCCGTAGTGTTCAG 60 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 AAGAAACAAAATGCTACATCTCAATCCAACGGTTCCTGTGCAACCTGGAGTCACTGGCCT 120 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 GGGAACTGGGGTTCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCA 180 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 AATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAAT 240 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 CTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATG 300 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 CCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATA 360 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 AATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCA 420 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 ATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTG 480 consensus_9259#1 --------------------------------------------TTCTCTCGATCCGTTG 16 consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 GT-CAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCC 539 consensus_9259#1 GAGCAATTCCATCGACTCTTGGAATCACTCAGCTGCTGCTGGCCTTTGCCAACTAGCTCC 76 consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 ACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAA 599 consensus_9259#1 ACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGATCCTGGTGGCTGGAA 136 consensus_9259#2 ------------------------------------------------------------ consensus_9259#0 TCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGT 659 consensus_9259#1 TCACGGGAATGCCGAATCACGTTCTCTGAACAGGCAATGGACAGGACCTACTTCCTACGA 196 consensus_9259#2 ------TAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGT 54 ******* ****************** ********************** ** consensus_9259#0 TATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCC 719 consensus_9259#1 TATTCCAGGGCCTAAGCCGCCCAACCATTTGGCTGCCAGCTATATTAACGAAGCACTACC 256 consensus_9259#2 TATTCCAGGTCNTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCC 114 ********* * ** ************************ ***************** ** consensus_9259#0 TGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGG 779 consensus_9259#1 TGCACATCAAAATGGAGCTTCTATATCTGTGATGGCAACAGCTGCTGCTATCGGTCTTGG 316 consensus_9259#2 TGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGG 174 ***************************** ********************* ******** consensus_9259#0 TAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAG 839 consensus_9259#1 CAACTCCCCACGTCGTCCACCGATGCCTCATTGATCATCGACAGGATCTGAAGATCCAAG 376 consensus_9259#2 TAACTCCCCAGGT-GTCCACCGATGCCTCATTGGTCATCAACAGAATCTGTAGATCCAAG 233 ********* ** ******************* ***** **** ***** ********* consensus_9259#0 TGGGTTTTCTAACGTTTATTGTATTTGTAATCTCCGATGCCTTTTTACCGTATGACTAAG 899 consensus_9259#1 TAG----TATAAGATTACATGAAT---CATTGTACAGAACGTCTGC------TGACTGCA 423 consensus_9259#2 TAA----TATAAAATTAAATGAAT---CATTGTACAGAACGTCAGC------TGGTGGCT 280 * * *** ** ** ** * * * * * * ** consensus_9259#0 AACTCTTATGAGTTCATTAGTTGCATCATTTTTATCCATTATCCTTCTCATATTACATTT 959 consensus_9259#1 ATCTTTCTTCTACTCGT--GCCGCAGCACCAAAGCCAGCTGGTCTCAA------------ 469 consensus_9259#2 ATCTTTCTTTTACTCGT--GGCGCAGCACCAAATCCACATGGTTTCAATTAATCCCATCC 338 * ** * * ** * * *** ** * * * consensus_9259#0 TCGCACG-TAATTTTGTCTTATTCGTTCTTAGA-GTTGGATATTG-ACTAGTTGTCTAAA 1016 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 AGGTACACTTGTTCCAAATGGTTTACTCTTCGGTGATTGGTGTTGTGGTATGCGTACAAA 398 consensus_9259#0 TCACTACTAACTTTGTAATTTATCATCTGATTTCCCAGTTAATACCGTAGGTTTCTTTAT 1076 consensus_9259#1 ------------------------------------------------------------ consensus_9259#2 TAA--GATAGGTTCATCAAGTGTTGTGTGTAACAGCA----------------------- 433 consensus_9259#0 GTAAGTTAATTTACGCTCACATATTANGGAAATA 1110 consensus_9259#1 ---------------------------------- consensus_9259#2 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||