These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1312 fasta sequence [AATTTTATTTTTGGTAATTACAATTTATCGTCTGTTGGGTAAGGAAGATCTTGTACAGTCACAACAGTTATGATTAATAGCAGTTTTCTGCAAAAATGCTCAATACATGTTAATTTCATTGTTGTGTAGTCTGTACCTTACGCGCTGGCACAGTTTACTCAAATAATTTATAGGAAAATCGGATAGATTCATAACTTTAACAGAAGGCAAAACATCTACAAAAGATAACATAAGGTGTCCAATTTGATGTATTTATCTTTATTGGAAGAAACAGTTTTCCAGGTTTGGTTTTCATTTTTGAAAAAATTATAAGTAAGAAAAAACAATATCACATTTTGGTTCCTGATGTACTTTGTCACATAAAATATGCACTGGTTACTGAATATTTTTCATTCATGGATTGCACTTTACCGGGGCTTCCGGTTTATTCGATTACCTAGAAGTATGTGTACATAAACGCAGTGAACAAAGTTGTAATGCAGTAGGTAGGTAAGCCAATGGTTTTCTCGCACACAGCGACAAAATAAAAATGATATATATTGTTGATTGTCATCTGCAGTCATTTTTGGCGCTTTACAATTCAAAAGAAGTTAATGAGCAAATATTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTATTGAAGTGTTCAATAGGCTTCCTGTTGTTGTGGTATTGGTGGAGGATTGATCTAAATCTTGATCTTCTGCTTCATGTTGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTGATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAATCTATACTTTTCANACGATGACCACGACAGTAATAGCTCCATTCACANATTTCATTCTGTTCACTTTTATCACGAACATCCTTTACGAATAACACAGTAGCAGGAAACATTAGAGCATATTTCTCCAGACATTCATATTGCGCAAAAGATTGGCGTGTGAATTACTGTATATAGTAGTGAGGGAAATAAATTTAAAATCATTTAAGTAGATATAACATCCATCAGCAATGGAAATGTGTAACCAAAATAGGCTTCTTTATGAAAGCCGAGAATTATGGTGTACAATTAAAACT] [+] EMBL AW017176 [AATTTTATTTTTGGTAATTACAATTTATCGTCTGTTGGGTAAGGAAGATCTTGTACAGTCACAACAGTTATGATTAATAGCAGTTTTCTGCAAAAATGCTCAATACATGTTAATTTCATTGTTGTGTAGTCTGTACCTTACGCGCTGGCACAGTTTACTCAAATAATTTATAGGAAAATCGGATAGATTCATAACTTTAACAGAAGGCAAAACATCTACAAAAGATAACATAAGGTGTCCAATTTGATGTATTTATCTTTATTGGAAGAAACAGTTTTCCAGGTTTGGTTTTCATTTTTGAAAAAATTATAAGTAAGAAAAAACAATATCACATTTTGGTTCCTGATGTACTTTGTCACATAAAATATGCACTGGTTACTGAATATTTTTCATTCATGGATTGCACTTTACCGGGGCTTCCGGTTTATTCGATTACCTAAAAGTATGTGTACATAAACGCAGTGAACAAAG ] [+] EMBL CD169693 [ TACCGGGGCTTCCGGTTTATTCGATTACCTAGAAGTATGTGTACATAAACGCAGTGAACAAAGTTGTAATGCAGTAGGTAGGTAAGCCAATGGTTTTCTCGCACACAGCGACAAAATAAAAATGATATATATTGTTGATTGTCATCTGCAGTCATTTTTGGCGCTTTACAATTCAAAAGAAGTTAATGAGCAAATATTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTA ] [-] EMBL AI977688 [ GATTACCTAGAAGTATGTGTACATAANCGCAGTGAACAAAGTTGTAATGCAGTAGGTAGGTAAGCCAATGGTTTTCTCGCACACAGCGACAAAATAAAAATGATATATATTGTTGATTGTCATCTGCAGTCATTTTTGGCGCTTTACAATTCAAAAGAAGTTAATGAGCAAATATTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTATTGAAGTGTTCAATAGGCTTCCTATTGTTGTGGTATTGGTGGAGGATTGATCTAAATCTTGATCTTCTGCTTCATGTTGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTGATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAATCTATACTTTTCAAACGATGACCACGACAGTAATAGCTCCATTCA ] [+] EMBL CD065238 [ GTTTTCTCGCACACAGCGACAAAATAAAAATGATATATATTGTTGATTGTCATCTGCAGTCATTTTTGGCGCTTTACAATTTAAAAGAAGTTAATGAGCAAATGTTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTATTGAAGTGTTCAATAGGCTTCCTGTTGTTGTGGTATTTGTGGAGGATTGATCTAAGTCTTGATCTTCTGCTTCATGTTGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATCTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTGATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAATCTATACTTTTCANACGATGACCACGACAGTAATAGCTCCATTCACANATTTCATTCTGTTCACTTTTATCACGAACATCCTTTACGAATAACACAGTAGCAGGAAACATTAGAGCAT ] [+] EMBL CD201884 [ CTCGCACACAGCGACAAAATAAAAATGGTATATATTGTTGATTGTCATCTGCAGTCATTTTTGGCGCTTTACAATTCAAAAGAAGTTAATGAGCAAATATTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTATTGAAGTGTTCAATAGGCTTCCTGTTGTTGTGGTATTGGTGGAGGATTGATCTAAATCTTGATCTTCTGCTTCATGTTGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTGATTCTGGGAATTCTACCTTTATAAGACGCTNTTCTGATGAGTAGTGAATAGCTATACAATCTATACTTTTCANACGATGACCACGACAGTAATAGCTCCATTCACAAAATTCATTCTGTTCACTTTTATCACGAACATCCTTTACGAATAACACAGTAGCAGGAAACATTANAGCATATTTCTCCAGACATTCATATTGCGCAAAAGATTGGCGTGTGAATTACTGTATATAGTAGTGAGGGAAATAAATTTAAAATCATTTAAGTAGATATAACATCCATCAGCAATGGAAATGTGTAACCAAAATAGGCTTCTTTATGAAAGCCGAGAATTATGGTGTACAATTAAAACT] [+] EMBL CD201963 [ CTCGCACACAGCGACAAAATAAAAATGATATATATTGCTGATTGTCATCTGCAGTCATTTTCGGCGCTTTACAATTCAAAAGGAGTTAATGAGCATATATTAACGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTATTGAAGCGTGCAATAGGCTTCCTGTTGTTGTGGTATTGGCGGAGGATTGATCTATATCTTGATCTTCTGCTTCATGGTGCGAGTTGCTACTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTG AACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATTTCGGCTTGCGACTGAAA ] [-] EMBL CD188402 [ TTCAAAAGAAGTTAATGAGCAAATATTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCACTAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTATTGAAGTGTTCAATAGGCTTCCTGTTGTTGTGGTATTGGTGGAGGATTGATCTAAATCTTGATCTTCTGCTTCATGTTGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCA ] consensusID : consensus_9297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CTAAATCTTGATCTTCTGCTTCATGATGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTGATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAATCTATACTTTTCAAACGATGACCACGACAGTAATAGCTCCATTCACAAATTTCATTTTGTCTCAGTTTTCTCGCTATGCCTCACTGATTCCGATCAACGCTAGTTACAGGACACTATAGAGCACTACTTGTTAAGCCTTCCAAGCGTTCGCAGTATACCATTAGTGTCGACTCGCGGACAGACTAGTAAGTCAATAGTGATTATGGACCCTCCAGCAGTCATTGTCATTAGTATCCAAACCCCACTGTTATCGCCAGACCATTGTCATATGAATCGTGTGATATGTATCGTTCAAGAAGTAGTAT] [-] EMBL CD201933 [CTAAATCTTGATCTTCTGCTTCATGATGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACGCACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTGAATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTGATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAATCTATACTTTTCAAACGATGACCACGACAGTAATAGCTCCATTCACAAATTTCATTTTGTCTCAGTTTTCTCGCTATGCCTCACTGATTCCGATCAACGCTAGTTACAGGACACTATAGAGCACTACTTGTTAAGCCTTCCAAGCGTTCGCAGTATACCATTAGTGTCGACTCGCGGACAGACTAGTAAGTCAATAGTGATTATGGACCCTCCAGCAGTCATTGTCATTAGTATCCAAACCCCACTGTTATCGCCAGACCATTGTCATATGAATCGTGTGATATGTATCGTTCAAGAAGTAGTAT] consensusID : consensus_9297#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [GTTTCCTGTTTTTCGTCCTTTCTAGCCTGTTGTTAAACTTACAATGAACCGGTATAATAATGTATTTTCATACACAAGTAATTCACACGACAATCTTTTGCGCAATATTGAATGTCTGGAGAAATATGCTCTAATGTTTCCTGCTACTGTGTTATTCGTAAAGGATGTTCGT] [+] EMBL CD193904 [GTTTCCTGTTTTTCGTCCTTTCTAGCCTGTTGTTAAACTTACAATGAACCGGTATAATAATGTATTTTCATACACAAGTAATTCACACGACAATCTTTTGCGCAATATTGAATGTCTGGAGAAATATGCTCTAATGTTTCCTGCTACTGTGTTATTCGTAAAGGATGTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9297#0 AATTTTATTTTTGGTAATTACAATTTATCGTCTGTTGGGTAAGGAAGATCTTGTACAGTC 60 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 ACAACAGTTATGATTAATAGCAGTTTTCTGCAAAAATGCTCAATACATGTTAATTTCATT 120 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 GTTGTGTAGTCTGTACCTTACGCGCTGGCACAGTTTACTCAAATAATTTATAGGAAAATC 180 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 GGATAGATTCATAACTTTAACAGAAGGCAAAACATCTACAAAAGATAACATAAGGTGTCC 240 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 AATTTGATGTATTTATCTTTATTGGAAGAAACAGTTTTCCAGGTTTGGTTTTCATTTTTG 300 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 AAAAAATTATAAGTAAGAAAAAACAATATCACATTTTGGTTCCTGATGTACTTTGTCACA 360 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 TAAAATATGCACTGGTTACTGAATATTTTTCATTCATGGATTGCACTTTACCGGGGCTTC 420 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 CGGTTTATTCGATTACCTAGAAGTATGTGTACATAAACGCAGTGAACAAAGTTGTAATGC 480 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 AGTAGGTAGGTAAGCCAATGGTTTTCTCGCACACAGCGACAAAATAAAAATGATATATAT 540 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 TGTTGATTGTCATCTGCAGTCATTTTTGGCGCTTTACAATTCAAAAGAAGTTAATGAGCA 600 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 AATATTAGCGCCTCCCAAGGCGAACTGATGCTCCGAACGAACTCCGAGAACTCCCAGCAC 660 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 TAAGTGGGTTTCCATGGTTGTCTAGAAGACCAGTTGCCGTGGCTGGTCGCGCAGGTGGTA 720 consensus_9297#1 ------------------------------------------------------------ consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 TTGAAGTGTTCAATAGGCTTCCTGTTGTTGTGGTATTGGTGGAGGATTGATCTAAATCTT 780 consensus_9297#1 ---------------------------------------------------CTAAATCTT 9 consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 GATCTTCTGCTTCATGTTGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACG 840 consensus_9297#1 GATCTTCTGCTTCATGATGCGAGTTGCTAGTAGTTCCGGGAACAGAGTAACTGACTAACG 69 consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 CACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTG 900 consensus_9297#1 CACCACTAGCTGAACCTGAAACACAATTCGCTTTCCGCATGGCAATTTCCAGGAGCTCTG 129 consensus_9297#2 ----------------------------------------------------GTTTCCTG 8 * *** consensus_9297#0 AATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTG 960 consensus_9297#1 AATCACTCAAATTTCGGCTTGCGACTGAAAGTAATGAGAGCATTTCTTCATGAATACGTG 189 consensus_9297#2 TTTTTCGTCCTTTCTAGCCTGTTGTTAAACTTACAATGAAC----CGGTATAATAATGTA 64 * * ** ** ** * ** ** ** * * ** * * ** consensus_9297#0 ATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAAT 1020 consensus_9297#1 ATTCTGGGAATTCTACCTTTATAAGACGCTTTTCTGATGAGTAGTGAATAGCTATACAAT 249 consensus_9297#2 TTTTCATACACAAGTAATTCACACGACAATCTTTTGCGCAATATTGAATGTCTGGAGAAA 124 ** * ** * * *** * ** ** * ** ***** ** * ** consensus_9297#0 CTATACTTTTCANACGATGACCACGACAGTAATAGCTCCATTCACANATTTCATTCTGT- 1079 consensus_9297#1 CTATACTTTTCAAACGATGACCACGACAGTAATAGCTCCATTCACAAATTTCATTTTGTC 309 consensus_9297#2 -TATGCTCT---AATGTTTCCTGCTACTGTGTTA--TTCGTAAAGGATGTTCGT------ 172 *** ** * * * * * * ** ** ** * * * * *** * consensus_9297#0 TCACTTTTATCACGAA----CATCCTTTACGAATAACAC-AGTAGCAGGAAACATTAGAG 1134 consensus_9297#1 TCAGTTTTCTCGCTATGCCTCACTGATTCCGATCAACGCTAGTTACAGGACACTATAGAG 369 consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 CA-TATTTCTCCAGACATTCATAT-TGCGCAAAAGATTGGC-GTGTGAATTACTGTATAT 1191 consensus_9297#1 CACTACTTGTTAAGCCTTCCAAGCGTTCGCAGTATACCATTAGTGTCGACTCGCGGACAG 429 consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 AGTAGTGAGGGAAATAAATTTAAAATCATTTAAGTAGATATAACATCCATCAGCAATGGA 1251 consensus_9297#1 ACTAGTAAGTCAATAGTGATTATGGACCCTCCAGCAGTCATTGTCATTAGTATCCAAACC 489 consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 AATGTGTAACCAAAATAGGCTTCTT-TATGAAAGCCGAGAATTATGGTGTACAATTAAAA 1310 consensus_9297#1 CCACTGTTATCGCCAGACCATTGTCATATGAATCGTGTGATATGTATCGTTCAAGAAGTA 549 consensus_9297#2 ------------------------------------------------------------ consensus_9297#0 CT-- 1312 consensus_9297#1 GTAT 553 consensus_9297#2 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||