These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1253 fasta sequence [TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTGTTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCGCTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACGAAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGAGGCATCTTCATTTAAGTTTAGGTTACAAGG-AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC-CCGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAGTACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTGAATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACGAATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGCATCANACAAACTGC-ATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTGTATCTACTATTTANATTTCAGAT-AATTTACNAATAACATGTATAAACTNTGATGNGNTGNTGTATACCCGA-TC-ATATATCATTNCGATGNTATGGNATNNAG-TG-TTCATTGGGNTTTATT-TT-AT-ANATAT-AAATTCTG-TTATCC-TCNNNAGTATTAAATATATAAGTTTAACA] [-] EMBL CD124985 [TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTGTTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCGCTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACGAAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGAGGCATTTTCATTTAAGTTTAGGTTACAAGG AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAA ] [-] EMBL CD166693 [ ATGAGGCATCTTCATTTAAGTTTAGGTTACAAGG AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGAC ATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGA GTACTTAACACCGAAACATCAGTT GATACT GATG ] [-] EMBL CD166653 [ ATGAGGCATCTTCATTTAAGTTTAGGTTACAAGG AACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC CCGAAACGTCAGT ] [+] EMBL CD166630 [ ACAAGGTAACTGCTGGAAGAAGTCAAAAGACTTGGCCCATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTTATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC CCGAAACATCA ] [+] EMBL CD079441 [ TGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATGGAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCACTTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAAC CCGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAGTACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTGAATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACGAATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGCATCANACAAACTGC ATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTGTATCTACTATTTANATTTCAGAT AATTTACNAATAACATGTATAAACTNTGATGNGNTGNTGTATACCCGA TC ATATATCATTNCGATGNTATGGNATNNAG TG TTCATTGGGNTTTATT TT AT ANATAT AAATTCTG TTATCC TCNNNAGTAT ] [-] EMBL CD186757 [ tcactgcGTCGACGAGCTTCCGGTGTACTTAAC CCGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAG ] [-] EMBL CD073711 [ ATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGTTCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTGATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCACATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATAATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAGTACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTGAATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTAAACGAATGGCCAGAAGCTAGGGAGCAAACAATAAAAAATTTCTATGAACAACGTCCATTTATGCATCAAAC AACTGCAATGCTGGTCGAAAGGGATTTAGATCTTCATGAAAATGGGAAAACTGTATCTACTATTTA AATTCAGATAAATTTACAAATAACATGTATAAACTTTGATGTGTTGTTGTATA CCGATTCAATATATCATTTCGATGTTATGGTAATAAGTTGTTTCATTTGGGTTTATTGTTCATAAAATATAAAATACTGTTTATCCATCAGAAGTAATAAATATATAAGTTTAACA] consensusID : consensus_9307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 111 fasta sequence [TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGATACAGTTTTCCCATNTNCATCAAGCCAAATGCANGTGTTGANAATATGTTTAGTNT] [+] EMBL SMRAP155 [TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGATACAGTTTTCCCATNTNCATCAAGCCAAATGCANGTGTTGANAATATGTTTAGTNT] consensusID : consensus_9307#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 81 fasta sequence [TAAATTTATCTGAATTTAAATAGTAGATACAGTTTCCCCATTTTCATGAAGTCAAATGCAAGTGTTGAGAATATGTTTAGT] [+] EMBL SMRAP173 [TAAATTTATCTGAATTTAAATAGTAGATACAGTTTCCCCATTTTCATGAAGTCAAATGCAAGTGTTGAGAATATGTTTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 TCTTGGTGCTACCACCAACATTCCCTTATGGTGGGATGGAAAATCCATGTTTAACATTTG 60 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 TTTCACCAACCTTATTGGCTGGTGATCGATCATTAGCTAATGTAATCGCTCATGAGATCG 120 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 CTCATTCATGGACTGGTAATTTAGTAACAAATTCAAGTTGGGAGGATTTTTGGTTAAACG 180 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 AAGGACATACTGTGTATTTGGAACGCTTAATTGAAGAACGCATTCATGGGTCGCATATGA 240 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 GGCATCTTCATTTAAGTTTAGGTTACAAGGAACTGCTGGAAGAAGTCAAAAGACTTGGCC 300 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 CATCAGATCCAATGACAAAGCTGATCGTAGACTTAAAAGGAATTGATCCAGACGAAGCTT 360 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 ATAGTCGAATTCCCTATGAAAAGGGATCTCTTTTACTCTACTACTTAGAGACTTTATATG 420 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 GAAAAGAATCTATGCTTAATTGGTTAAAAGCTTATGTGAAACAGTTTTCTGGACAATCAC 480 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 TTAATTCAAATACTTGGTTGGAATTTTTAACAAGTCAACTAGGTTCCGATGTACTTAACC 540 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 CGAAACATCAGTTGGATACTTGGATGCGTAGTCCAGGTTTGCCCCCATGGATACCAAAGT 600 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 TCGATGCTGACGAGTTACTTTCAGAATGTGATAGTATGCAAAAATTACTTACTTCATCTG 660 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 ATCTTTGTTCAAATGTTACTGAAATGCAAAGTTTGACTCGACTATGGAATAAAATGTCAC 720 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 ATGTACAACGTGAATTAACTTTACGCCACGTTGTTGACTCTGAACCATTAAATGTTAATA 780 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 ATTTATGCAAAATTGATGAGCTATTACAGCTATCTAAACAGAAAAATGCTGAGATACGAG 840 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 TACAGTGGTGTCTAATCTGCATTATTTCCCGTCATTTACCTGCGTTGGATCACATTCTTG 900 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 AATTTTTAAACAGTCAGGGTCGTATGAAGTACACTCGCACCATATATCGTGCTTTANACG 960 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 AATGGCCAGAAGCTAGGGAGCANACAATANAAAATTTCTATGAACAACGTCCATTTATGC 1020 consensus_9307#1 ------------------------------------------------------------ consensus_9307#2 ------------------------------------------------------------ consensus_9307#0 ATCANACAAACTGCATGCTGGTCGAAAGGGATTTAGATCTTCATGANNATGGGAAAACTG 1080 consensus_9307#1 ----TATCATTATGATTNGTGCATGTTATTTGTAAATTTATCTGAATTTAAATACTAGAT 56 consensus_9307#2 --------------------------------TAAATTTATCTGAATTTAAATAGTAGAT 28 consensus_9307#0 TATCTACTATTTANATTTCAGATAATTTACNAATAACATGTATAAACTNTGATGN--GNT 1138 ** * * * ** * ** * * consensus_9307#1 ACAGTTTTCCCA--TNTNCATCAAGCCAAATGCA-NGTGTTGANAATATGTTTAGTNT-- 111 consensus_9307#2 ACAGTTTCCCCA--TTTTCATGAAGTCAAATGCA-AGTGTTGAGAATATGTTTAGT---- 81 consensus_9307#0 GNTGTATACCCGATCATATATCATTNCGATGNTATGGNATNNAGTGTTCATTGGGNTTTA 1198 ** * *** * ** * * * * * * * * ** * consensus_9307#1 ------------------------------------------------------- consensus_9307#2 ------------------------------------------------------- consensus_9307#0 TTTTATANATATAAATTCTGTTATCCTCNNNAGTATTAAATATATAAGTTTAACA 1253 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||