These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 371 fasta sequence [CAGCTTCTTCATTGAA-CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGATA] [-] EMBL BG930241 [CAGCTTCTTC CTGAAGAATGGATTTAAACTCTTACTCGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCACCTGATGTTTTCGTTCAACCCG ATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGAg ] [+] EMBL BG931798 [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA ] [+] EMBL BG931658 [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA ] [+] EMBL BG931624 [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCAACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTAGATAAGAACGGTACGAACGATAGCATCAGTATCGATCGACTCAAAGCAGCGTACTTAGAAGGAAACCCTAGCTACGTCGATTTCCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA ] [+] EMBL BG931659 [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA ] [+] EMBL BG931608 [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGA ] [+] EMBL BG931788 [CAGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAACGATAGCATCAGTATCGATCGACTCANAGCTGCGTACCTAGAAAGAAA CCTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGA ] [+] EMBL BG931679 [ AGCTTCTTCATTGAA CATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGCGTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAATTACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAGCATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGAACGGTACGAACGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACCCTATCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTACCCTACACGATA] consensusID : consensus_9317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [TTTTTCTTCGGTACAAGCAAACGACACAGCTACTACACTCTGATGACCCTACACGACAACCGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATGCGTTCTGGAAGATTGAGTAAGATTTCCAGAACACTTAACGAATATTGAGATGGTCATAAGCTT] [+] EMBL AA952805 [TTTTTCTTCGGTACAAGCAAACGACACAGCTACTACACTCTGATGACCCTACACGACAACCGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATGCGTTCTGGAAGATTGAGTAAGATTTCCAGAACACTTAACGAATATTGAGATGGTCATAAGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9317#0 CAGCTTCTTCATTGAACATGGATCTAAACTCTTACACGAGTAGGCTTACAAACGCTATGC 60 consensus_9317#1 ------------------------------------------------------------ consensus_9317#0 GTTCAGTTAAACCTGCTCACACTCGACCTCAATCAACTGATGTTTTCGTTCAACCCGAAT 120 consensus_9317#1 ------TTTTTCTTCGGTACAAGCAAACGACA-CAGCTACTACACTCTGATGACCCTA-- 51 ** * * *** * * * * ** ** * ** **** * consensus_9317#0 TACGACATAGTACACACGTCTTCGTTCGTCGAGACTCACATCGACGACCCCTCGAATCAG 180 consensus_9317#1 CACGACAACCGACACACAACTTGATCATTCGCTAACTGGATAGAAAAACCTAAAACAATG 111 ****** ****** *** * *** * ** ** * ** * * consensus_9317#0 CATACGAAGGACCCTTCAAAGTTCTTCAACGCGAACCTAAGTACTATGTAGTCGATAAGA 240 consensus_9317#1 CGTTCTGGAAGATTGAGTAAGATTTCCAGAAC--ACTTAACGAATATTGAGATGGTCATA 169 * * * *** * * ** * ** *** * *** ** * * * * consensus_9317#0 ACGGTACGAAAGATAGCATCAGTATCGATCGACTCAAAGCTGCGTACCTAGAAGGAAACC 300 consensus_9317#1 AGCTT------------------------------------------------------- 174 * * consensus_9317#0 CTAGCTACGTCGATTTTCCTTCGGTACAAGCAAACGACACAGCTACTACACTCGTAGTAC 360 consensus_9317#1 ------------------------------------------------------------ consensus_9317#0 CCTACACGATA 371 consensus_9317#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||