These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1117 fasta sequence [TCGAGCCAANAATTCGGCACGAGGATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG-AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTCATTCTTGTCAACGTTACTTTTTCTTTTAGGACAGTTTTACAATAAATTAGTA] [+] EMBL CD082614 [TCGAGCCAANAATTCGGCACGAGGATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAGAAATGT ATATCCGTTTGTGAAAAAATCTGTTCAGAAT ] [+] EMBL CD084279 [ gTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCT ] [-] EMBL CD160062 [ GCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAA ] [-] EMBL CD076208 [ CATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTC ] [+] EMBL CD138180 [ TCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTC ] [-] EMBL CD076955 [ TGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAGACAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCCAATATCCGTTCTATTTACATTCAGAGCTCAGGTATGTTTATTCCTTTGTACTACGATGAAACAGAAGCGCCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCATAAATCTGCCCATCGAAGATCTTACGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCCCAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAAGATAGTTC ] [-] EMBL AI975229 [ ATCTTTTCTCTTCATCCGAGCTAAAGGAG AATGTAATATCCGTTTGTGAAAAAATCTGTTCAGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTATCTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTTATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAGCTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAGATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAATCGACAAAATTTTACGCAAACGGAACTTTGAAGATAGTAGCATCCCTCAAATAAAGTTAAGACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTCATTCTTGTCAACGTTACTTTTTCTTTTAGGACAGTTTTACAATAAATTAGTA] consensusID : consensus_9361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATA] [+] EMBL AI975480 [GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATTCCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACATACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGATCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATA] [+] EMBL AI976552 [GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAATGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACATCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCGTTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACGCACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCACTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAACTTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAATCGTTCATCGTTTACAAAATAAACTGGGTAAAGCAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9361#0 TCGAGCCAANAATTCGGCA-CGAGGATTATCAAAGAAAATTTAAATAACATCACAGATAA 59 consensus_9361#1 ----------GTTACGATAATGGATATTATCAAAGAAAATTTAAATAACATCACAGATAA 50 * ** * * *********************************** consensus_9361#0 TGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACA 119 consensus_9361#1 TGGTTTCAAGAAACCTGAAGGGAAACTCAAAACTCTAAACTTAATTCCTGACAGTGTACA 110 ************************************************************ consensus_9361#0 TCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCG 179 consensus_9361#1 TCTTGTTGTAGTAAGCAAATTATCCATTCCAAAAATTATTCGTGTAAACTTACCACATCG 170 ************************************************************ consensus_9361#0 TTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACG 239 consensus_9361#1 TTCAAAAAATCTGTCTATCTGTTTGATAGTTAAAGATTTTCGCAAAGATGATTATGAACG 230 ************************************************************ consensus_9361#0 CACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCA 299 consensus_9361#1 CACTACAGAATCTTGGAAACGACGTTGGAATATGGATTTGAAAAAGTCAGAACTTTCTCA 290 ************************************************************ consensus_9361#0 CTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAAC 359 consensus_9361#1 CTTGGACGCACCTGAAGTGACATTTTTACCTCTGCGTGAATTAAAAGTAGCTTACCAAAC 350 ************************************************************ consensus_9361#0 TTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAAT 419 consensus_9361#1 TTTTGCCGCCAAACGTCGACTGGCTGGCACTTTTGATATATTTCTTGCCGACAAACGAAT 410 ************************************************************ consensus_9361#0 CGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATT 479 consensus_9361#1 CGTTCATCGTTTACAAAATAAACTGGGTAAAGCATTCTACCAGGAGGTTTCAGGGAAATT 470 ************************************************************ consensus_9361#0 CCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACA 539 consensus_9361#1 CCCTATCCCAACGTCATTTTCGAAAAACAATCTTGTAGATACTGTTAGAGAGCAACTACA 530 ************************************************************ consensus_9361#0 TACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGA 599 consensus_9361#1 TACATCTTTGTTTGTAATTCGAGGCCATGGGACAACTGATAGTCTCATAATTGGGGATGA 590 ************************************************************ consensus_9361#0 TCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATATCCGTTTGTGAAAAAATCTGTTC 659 consensus_9361#1 TCTTTTCTCTTCATCCGAGCTAAAGGAGAATGTAATA----------------------- 627 ************************************* consensus_9361#0 AGAATGGCCAGGTGGTGGTATGGCGAATATCCGTTCTATTTACATTCAGAGCTCAGGTAT 719 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 CTCTATTCCTTTGTACTACGATGAAACAGAAGCACCTTTAACCACAATAAGTGAAAAGTT 779 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 ATCGAGTCTTCCTAAATCTGCCCATCGAAGATCTTATGCACTTATTAAGAAACTTAAAAG 839 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 CTCAGAGGATGGTGTGCCAATCGTTAGTCAACCTAAAAAGTCTCAAAAACCACTTAAAAG 899 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 ATTACCGAAAGAACTCGTTTCACAAATTGCAGATGATCTTCCTTTGACATCAGATGAAAT 959 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 CGACAAAATTTTACGCAAACGGAACTTCGAAGATAGTAGCATCCCTCAAATAAAGTTAAG 1019 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 ACGAAATAAAAGGATTTCACGTCGTAAATTTGCAAAAATATAGTTCATTCTTGTCAACGT 1079 consensus_9361#1 ------------------------------------------------------------ consensus_9361#0 TACTTTTTCTTTTAGGACAGTTTTACAATAAATTAGTA 1117 consensus_9361#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||