These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1979 fasta sequence [TATAATAATGAAACAGTCAATACTAATAATAGTAATAATAATAAGTTTAATTTTAATAGACCAAATGTTACTATATCAACGGATTGGAATTGGTGGCCATTTAATGTCCTTACCTATCTGTTTAATGCATCTCCTTCACAAAGATTTACCATGATGATTGCATATGCTATTTTAGGTTTTTTATTCCTATCAACAATACATCTATATCATCGATTAGCATTAATTGATTTACAAACTGGTCCAACTATACGTCGTGCTGGAATTCATCAGGAATCATCTACTACATCTAATTCAGAATTACCATAATTTAGAAGCACAATTAACTTATTTAACTCAACTTACTTCAAAAATGATTGAAACACTTGGTTATTTAACATCAGAATTAAATAGTTTCGTATTATATTCTAATCCAGAGAAATTTCACCAGATCAATCCACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAGTAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTTGTATTATTGTTGCATTTCATTTCAACGATCTTGTTTGTTGATCTTTCTTCTTTTGGTTCACAACTCATATAAACATTCCCCACTATCAGATCAAAACGCACATATACACACACACACACACAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCTTTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTACCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATGACTAGCGTTTGATCTGGATCAACTGGCTGGCAGTTAGTCCACTAGACTTGTTACGAACTTTATTTTCTTCGGATAGTTTGTTTCTAAATGACTTTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTCTCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAATACAAAACTTTACTACCACATTATTTTCATCATTACCACTACTACTACTATATATTGTGTCCCAAGTTTCTGTGTAATAAATTTTTTTTCTCTCTTGTTTACTACCATAATTTTTGTTCTTGTTAACTTTTTTTTTTTCGTTTGATTTCGGTATTTCATTTCTTCCCTCCTCTCATTTCTCTCACAATCTACAAGAAGAAACATTACAACGCATTCTCCCTTGTTTTATTCACCTTTCCAATTGAATCATGTGTTGTTACTGTTTGTTTGCTTCTTCTGCGCAAAATAACTATTCGTTCTTGTTTCGTTTAGTTCACCTTTTCCCATTGATGTTGACTTACATGTTATTATTATTATTATTATAAGTGATGATAATAATTGTAC] [+] EMBL CD069585 [TATAATAATGAAACAGTCAATACTAATAATAGTAATAATAATAAGTTTAATTTTAATAGACCAAATGTTACTATATCAACGGATTGGAATTGGTGGCCATTTAATGTCCTTACCTATCTGTTTAATGCATCTCCTTCACAAAGATTTACCATGATGATTGCATATGCTATTTTAGGTTTTTTATTCCTATCAACAATACATCTATATCATCGATTAGCATTAATTGATTTACAAACTGGTCCAACTATACGTCGTGCTGGAATTCATCAGGAATCATCTACTACATCTAATTCAGAATTACCATAATTTAGAAGCACAATTAACTTATTTAACTCAACTTACTTCAAAAATGATTGAAACACTTGGTTATTTAACATCAGAATTAAATAGTTTCGTATTATATTCTAATCCAGAGAAATTTCACCAGATCAATCCACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAGTAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTT ] [-] EMBL CD131679 [ CACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAGTAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTTGTATTATTGTTGCATTTCATTTCAACGATCTTGTTTGTTGATCTTTCTTCTTTTGGTTCACAACTCATATAAACATTCCCCACTATCAGATCAAAACGCACATATACACACACACACACACAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCTTTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTGCCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCT ] [+] EMBL CD121215 [ ACACAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCTTTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAGTGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTACCACTCTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGNATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACAT ] [-] EMBL CD121136 [ AAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTNTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCCCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTATCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATG ] [-] EMBL CD121752 [ AAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTATCCATGTTTTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTATCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATGACT ] [-] EMBL CD121243 [ CCCTCATTACCCCTCTTATCCATGTTNTGCTTCTTCTTCTTCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATGTAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTTCTGTACCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTGTAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCCTTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATG ] [-] EMBL AI975749 [ tAAATATACACTTCTTACAACCTCTCTTTTGGTTCATCATTTATGCAACAAAGAGTGAACTGTTTTGATATCTCTATCTCACTATTTGCATTATATACTATCATTAGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTT ] [-] EMBL AI975744 [ GCCTGGTATTCTACTCTATTAAATTACCCTTAAGAGATGCATATAAGATACATGTTAACTTGTTTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTGCATGAGTGCATACATTTCTTGTTCTAATGTAGACCTTTCTCTTTTTCTTTCTGCTTTAATATTTATTCTGTCAGCTATACATAGATGACTAGCGTTTGATCTGGATCAACTGGCTGGCAGTTAGTCCACTAGACTTGTTACGAACTTTATTTTCTTCGGATAGTTTGTTTCTAAATGACTTTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTCTCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAAT ] [-] EMBL AI067174 [ TTGTTTCTAAATGACTTTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTCTCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAATACAAAACTTTACTACCACATTATTTTCATCATTACCACTACTACTACTATATATTGTGTCCCAAGTTTCTGTGTAATAAATTTTTTTTCTCTCTTGTTTACTACCATAATTTTTGTTCTTGTTAACTTTTTTTTTTTCGTTTGATTTCGGTATTTCATTTCTTCCCTCCTCTCATTTCTCTCACAATCTACAAGAAGAAACATTACAACGCATTCTCCCTTGTTTTATTCACCTTTCCAATTGAATCATGTGTTGTTACTGTTTGTTTGCTTCTTCTGCGCAAAATAACTATTCGTTCTTGTTTCGTTTAGTTCACCTTTTCCCATTGATGTTGACTTACATGTTATTATTATTATTATTATAAGTGATGATAATAATTGTAC] consensusID : consensus_9636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GCAGAATTCGGTCCGAGGCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTAATCCATGTTTTGCTTCTTCTTTCTTCTACTTCT] [+] EMBL CD078121 [GCAGAATTCGGTCCGAGGCTCTTTGTATGTATAGTCCATTATCATCTATCTAAACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAAGGGAATAATGCCCTCCACCCCTCATTACCCCTCTTAATCCATGTTTTGCTTCTTCTTTCTTCTACTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9636#0 TATAATAATGAAACAGTCAATACTAATAATAGTAATAATAATAAGTTTAATTTTAATAGA 60 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CCAAATGTTACTATATCAACGGATTGGAATTGGTGGCCATTTAATGTCCTTACCTATCTG 120 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTTAATGCATCTCCTTCACAAAGATTTACCATGATGATTGCATATGCTATTTTAGGTTTT 180 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTATTCCTATCAACAATACATCTATATCATCGATTAGCATTAATTGATTTACAAACTGGT 240 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CCAACTATACGTCGTGCTGGAATTCATCAGGAATCATCTACTACATCTAATTCAGAATTA 300 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CCATAATTTAGAAGCACAATTAACTTATTTAACTCAACTTACTTCAAAAATGATTGAAAC 360 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 ACTTGGTTATTTAACATCAGAATTAAATAGTTTCGTATTATATTCTAATCCAGAGAAATT 420 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TCACCAGATCAATCCACTTTGAATACATAATATATATTGTATACAAGATGTAATTATCAG 480 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TAGTGTTACTAGTAGTATTAGTAGTATTATCATTATATTATTACTACTATCATATGTCTT 540 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 GTATTATTGTTGCATTTCATTTCAACGATCTTGTTTGTTGATCTTTCTTCTTTTGGTTCA 600 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CAACTCATATAAACATTCCCCACTATCAGATCAAAACGCACATATACACACACACACACA 660 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CAAGTATATTACAGTGTTATCTAACAAGTTCACGAGTATACATGTTTTTTGTATATATCT 720 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTACTTATTAATGTATTTCTTCTTTCTCTTTGTATGTATAGTCCATTATCATCTATCTAA 780 consensus_9636#1 -------GCAGAATTCGGTCCGAGGCTCTTTGTATGTATAGTCCATTATCATCTATCTAA 53 * * *********************************** consensus_9636#0 ACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAA 840 consensus_9636#1 ACAGTATCTACAATTTAATCAAACTATATTGATCTCATTACCATAGAAAAAAAAGGAAAA 113 ************************************************************ consensus_9636#0 GGGAATAATGCCCTCCACCCCTCATTACCCCTCTTA-TCCATGTTTTGCTTCTTCTT-CT 898 consensus_9636#1 GGGAATAATGCCCTCCACCCCTCATTACCCCTCTTAATCCATGTTTTGCTTCTTCTTTCT 173 ************************************ ******************** ** consensus_9636#0 TCTACTTCTTCCAAAAAAATATACACTACTTACTACCTCTCTTTTCGTTTATCATTTATG 958 consensus_9636#1 TCTACTTCT--------------------------------------------------- 182 ********* consensus_9636#0 TAACGAAGAGTGAATTGTTTTGATATCACTATCTCACTATTTGCATTATATACTATCATT 1018 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 AGTAATAATAGTAATAATGGTAGCATACAATGTTTCATCCCTCCTCTCTTCCTTAATTTT 1078 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CTGTACCACTTTTTTATCCCTCTCTCTCTCTCTTTGTCAAGTCTTATACACATTGACTTG 1138 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TAATCTTAATAACAAGTACATTTGCACAATTAGATCAGAATAGTATTTCTTATTTATGCC 1198 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTGTATTCTACTCTATTTAATTTACCTTTAGAGATGCATATAAGATACATGTTAACTTGT 1258 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTGTCTCTTTCTTTTAAAAGCTTACTCTGTTTTTGTTCGCTTACTCCAATCTATGTAGTG 1318 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CATGAGTGCATACATTTCTTGTTCTAATGTAGGCCTTTCTCTTTTTCTTTCTGCTTTAAT 1378 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 ATTTATTCTGTCAGCTATACATAGATGACTAGCGTTTGATCTGGATCAACTGGCTGGCAG 1438 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTAGTCCACTAGACTTGTTACGAACTTTATTTTCTTCGGATAGTTTGTTTCTAAATGACT 1498 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTTAGAGTTAATTCATTTATTTGATTGTTATTATGATTTCATACTTAGTTTCTCTCGGTC 1558 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TCCGTCTTTGTTCTCTCTATGACAATAAGTCTTTCAATACAAAACTTTACTACCACATTA 1618 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTTTCATCATTACCACTACTACTACTATATATTGTGTCCCAAGTTTCTGTGTAATAAATT 1678 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTTTTTCTCTCTTGTTTACTACCATAATTTTTGTTCTTGTTAACTTTTTTTTTTTCGTTT 1738 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 GATTTCGGTATTTCATTTCTTCCCTCCTCTCATTTCTCTCACAATCTACAAGAAGAAACA 1798 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTACAACGCATTCTCCCTTGTTTTATTCACCTTTCCAATTGAATCATGTGTTGTTACTGT 1858 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 TTGTTTGCTTCTTCTGCGCAAAATAACTATTCGTTCTTGTTTCGTTTAGTTCACCTTTTC 1918 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 CCATTGATGTTGACTTACATGTTATTATTATTATTATTATAAGTGATGATAATAATTGTA 1978 consensus_9636#1 ------------------------------------------------------------ consensus_9636#0 C 1979 consensus_9636#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||