These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1743 fasta sequence [GAGTTTCAATTAGTAGATCCAGATTATTTTCTAAACTAAATGGCTTACATTGATGTGCACAAATTACATCAACTTAAGTAGTTAAAGATGAATCGTTTGAGAAGAACATTCAGCTTTCGGAAACGGAAAAAGCAGAATAAGAATGAGGCTGGTGATTCTTCGAAACCACAACAATGGCTAGATGATGAGGTGAAAATCAAGGAGGGATTCTGTAATTTTCAAGTTAAGTATTTAGGGAATATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGGATGTGTCACGCCTTTCTCGCCGTCAAGGAATCCGGTGAACGGTTATCTCATGCTGTCGGGTGTGCTTTTGCTATATGTTTGGAGAAGAAACAAAGACGTGAACGAGATGCTCTTCAGTTAGAGGCTTCAGATGATCGTCCAACTTTCGCTCGTGTTGGATCGTTTCGTCCGGCTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTAACCATATTGGAGCTATTCCACGACCCCATGCTAGTCCATCAATTATTGAGCGACAAGGTTCACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCT-TTCATTACGTCTGGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG-ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC-AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCATGGGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTC-AACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAAGCTTCATCGCCATCGTCATTACCACCTACTCTTCTACCTCCAGAGCCTGATTGTCTTTCGGATCCATTCGATTTAGGTTGG] [+] EMBL CD161825 [GAGTTTCAATTAGTAGATCCAGATTATTTTCTAAACTAAATGGCTTACATTGATGTGCACAAATTACATCAACTTAAGTAGTTAAAGATGAATCGTTTGAGAAGAACATTCAGCTTTCGGAAACGGAAAAAGCAGAATAAGAATGAGGCTGGTGATTCTTCGAAACCACAACAATGGCTAGATGATGAGGTGAAAATCAAGGAGGGATTCTGTAATTTTCAAGTTAAGTATTTAGGGAATATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGAC ] [-] EMBL CD116622 [ TCTGTAGTTTTCAAGTTAAGTATTTAGGGAATATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGGATGTGTCACGCCTTTCTCGCCGTCAAGGAATCCGGTGAACGGTTATCTCATGCTGTCGGGTGTGCTTTTGCTATATGTTTGGAGAAGAAACAAAGACGTGAACGAGATGCTCTTCAGTTAGAGGCTTCAGATGATCGTCCAACTTTCGCTCGTGTTGGATCGTTTCGTCCGGCTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTAACCATATTGGAGCTATTC ] [-] EMBL CD122919 [ TCCGGCTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTAACCATATTGGAGCTATTCCACGACCCCATGCTAGTCCATCAATTATTGAGCGACAAGGTTCACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCT TTCATTACGTCTTGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGGGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTG ] [-] EMBL CD122879 [ TCGGGCTACTCTCGCCGAACGGTTAGTGGATCTTCAGTCTACTATTGTAGTCGACCCAGTGCCAAAATGTAATAATACATGTTCAACATCACTTACCACTATAATTCGGGTATCTTCACCAGTTATCCATATTGGAGCTATTCCACGACGCCATGATAGTCCATCAATTATTGAGTGACAAGGTTCAGTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCTGTTCATTACGTCTGGAAGGAGTTCTTTTGAATG ] [+] EMBL CD200582 [ GTCCATCAATTATTGAGCGACAAGGTTCACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCT TTCATTACGTCTTGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCACCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTG ] [-] EMBL CD116180 [ AAAGAGATCT TTCATTACGTCTGAAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTGACGAACG ACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCGCCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCATG ] [+] EMBL CD178325 [ TGGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTGTTTGTTAAAAGTGACGAACGTACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCATGGGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTCCAATGAATTCTC AACAAA ] [-] EMBL CD116149 [ AGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTATAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATNTGTTAAAAGTGACGAACG ACCTGAAAGAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCATCTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAACTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACATCACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATCCTAGTCCATG ] [+] EMBL CD196430 [ CCTTTTTCTGCTGCCCCAATCAATCCAGCTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACC AGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCAT GGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAAACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCCATGGG ] [+] EMBL CD068207 [ ATCCAGCTACAATACAACGGCACTATCAGATGGAA TGCAACAACAACAGCAACACCGAGCAAATAACAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTAGTTTCAACTATCAGTTCTACACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATACTTATAATTCTAGTCCGT GGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAAACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAA ] [-] EMBL CD138941 [ TCGATTAATACTTATAATTNTAGTCCAT GGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCTATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAAACAAATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCATCAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAAGCTTCATCGCCATCGTCATTACCACCTACTCTTCTACCTCCAGAGCCTGATTGTCTTTCGGATCCATTCGATTTAGGTTGG] consensusID : consensus_9885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGGTTTGTTATATTTTATTTGAATAACATACAATGATATTTCGAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGG] [+] EMBL CD141701 [TTGTGAAGAAGCGATTAAGGCTCTAAGAAAATCAAAGGTTTGTTATATTTTATTTGAATAACATACAATGATATTTCGAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCGTTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTTGTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCCGCCGTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9885#0 GAGTTTCAATTAGTAGATCCAGATTATTTTCTAAACTAAATGGCTTACATTGATGTGCAC 60 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 AAATTACATCAACTTAAGTAGTTAAAGATGAATCGTTTGAGAAGAACATTCAGCTTTCGG 120 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 AAACGGAAAAAGCAGAATAAGAATGAGGCTGGTGATTCTTCGAAACCACAACAATGGCTA 180 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 GATGATGAGGTGAAAATCAAGGAGGGATTCTGTAATTTTCAAGTTAAGTATTTAGGGAAT 240 consensus_9885#1 ---------------------------------------------------TTGTGAAGA 9 ** * * consensus_9885#0 ATTGAGGTTTACGAATCAAGAGGAATGCAAGTTTGTGAAG----AAGCGATTAAGGCTCT 296 consensus_9885#1 A--GCGATTAAGGCTCTAAGAAAATCAAAGGTTTGTTATATTTTATTTGAATAACATACA 67 * * * ** * * **** * * ****** * * ** *** * consensus_9885#0 AAGAAAAT-CAAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCG 355 consensus_9885#1 ATGATATTTCGAAGAAACCGCAAAAAGCTGTTTTATCTGTCAGCGGTGACGCTCTACGCG 127 * ** * * * ************************************************* consensus_9885#0 TTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTT 415 consensus_9885#1 TTTCAGATGACGTTAGTCAGCATCTCATCGTCGATCAGACAATTGAGAAAGTTTCATTTT 187 ************************************************************ consensus_9885#0 GTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCC 475 consensus_9885#1 GTGCTCCTGATAGAAATCATGAGAAGGGATTCGCATATATATGTCGTGATGGAGCTACCC 247 ************************************************************ consensus_9885#0 GCCGTTGGATGTGTCACGCCTTTCTCGCCGTCAAGGAATCCGGTGAACGGTTATCTCATG 535 consensus_9885#1 GCCGTTGG---------------------------------------------------- 255 ******** consensus_9885#0 CTGTCGGGTGTGCTTTTGCTATATGTTTGGAGAAGAAACAAAGACGTGAACGAGATGCTC 595 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 TTCAGTTAGAGGCTTCAGATGATCGTCCAACTTTCGCTCGTGTTGGATCGTTTCGTCCGG 655 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CTACTCTCGCCGAACGGCTACTGGATCCTCAGTCTACTATTGTAGTCGACCCAGTGCCAA 715 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 AATCTAATAATACATCTTCAACATCACCTACCACTATAACTCGGGTATCTTCACCAGTTA 775 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 ACCATATTGGAGCTATTCCACGACCCCATGCTAGTCCATCAATTATTGAGCGACAAGGTT 835 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CACTAAGAATATTTCCAAAATTACAAGAGAATAGTCCTTTTAAAAGAGATCTTTCATTAC 895 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 GTCTGGAAGGAGTTCCTTCGAATGTACGCCGTTTGGCTGGAATAATTCAAAGTGCACCTA 955 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 TAGCGGAGGAACCAGACACAGAATTTGAATCAAAGAAACCAGGAGTATTTGTTAAAAGTG 1015 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 ACGAACGACCTGAAAAAAGTGAATTAGTTACTGCATGTTCTACATCTAATTGGAGCTCAT 1075 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CTATAGTAGTGGCCAGTTCATCTTCGAACCTCCCAATTATGAATGGTTTAACTGTAGTAA 1135 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CTCAATCGTTTGTACCTAGTAGCCACTTTACAAGCGATTTCAATCTTGATCCTAAAACAT 1195 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CACAGGCATTTATACCTTCAGTTATTTCAGATCCTTTTTCTGCTGCCCCAATCAATCCAG 1255 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CTACAATACAACGGCACTATCAGATGGAATTGCAACAACAACAGCAACACCAGCAAATAA 1315 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CAGGTTCTTCACTACTAAGTTCCAAAGCTCCAATGGCTGTTGTTTCAACTATCAGTTCTA 1375 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CACCGACTTCACCATTTTTAGGCGGACCACCAATTGCTGCTCCAACCTTATCGATTAATA 1435 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CTTATAATTCTAGTCCATGGGGCAGTTACATATCCACAGATGCAACAATTTAACAAATCT 1495 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 ATTATTCAATATAATTCAAATTTACCCAGTTCTCCTACTGGTACAATGAATTCTCAACAA 1555 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 ATCTAACTTATCCTTCCAATGGTGTTTTAAAATCAGGTTCTACAAATCCATGGTCATCAT 1615 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CAATGGGATTGGTTTATGGGAGAAACGTTAGTAATACAAACTGGCAAGCTTCATCGCCAT 1675 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 CGTCATTACCACCTACTCTTCTACCTCCAGAGCCTGATTGTCTTTCGGATCCATTCGATT 1735 consensus_9885#1 ------------------------------------------------------------ consensus_9885#0 TAGGTTGG 1743 consensus_9885#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||