These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1096 fasta sequence [TAAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTTTTGTTTACATGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTAACACGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAAATTTCTTCTCAGTAAGGGGTTNTGAGAGTTGTATAAAAGTAATCATGTATATACTAAATAAACAACATTCTCGCTAACAGTTTTATTCAATAACAGCTTCATCCCACGGTCCATGAATAGTCCTTTTAATTTTCTGCATTCTTAATAAGTAACACGGTCCAGCAAAATTAATACACAGAGTCGATGTTATGAGTACGCAAAGAAAGATGCATCTATATTCAAATGATACTTCATTGTAAACTATCGGCCAAGCACTCAGAAGAGTTGTAGAACCAGATAATATGGTTAAGCATATTTGTGCTCGATCACCTCCGTTATTGCGAAACCTTCTTGTTAATGCTGGCCATAATGCTAATAAAGTGACGGCAGTGGAAAGCAATGCGAAAGTATGATAAGGGCCAGGTAGACGACTAGCCAAGCAGAGAGCAGCTAACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATCCCCTTTCCAATGAGTCTTATAATCAAAACATGTCCAATACACAAGAAGAAAAAAGGTACACATGGCGTATATAGAGTCCGTGCTTACGCTCGATAGGAGAGAATGCAGAATAGGAGCAAGCAGAAAGCAAAATGTAAAAAATACCACGCCCGACTTGATTTCAGGTATGACTTTATGAAATTGTCTTTCATTTCCCTCTTTCATTGACCAAAACATGGCATACCCAGTAGTTATTAAGAAGAAAAGGTAAACATTGAGATGCTGTGGAGAAATCCAACCGAATAGTAGGTAAAAATAGATAATTACAAGCAAAGACAAACAACAGAGTTGTTGATAAATGCTGCCAGCAGCGATTATAACATTACGTGCTCGAAGTTTGGGTAGAAAC] [+] EMBL CD199797 [TAAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTTTTGGTTACATGTTTAAGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTAACACGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTA ] [-] EMBL CD199734 [ AAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTTTTGTTTACATGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTAACACGTTGTATACAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAA ] [-] EMBL CD199656 [ AAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTTTTGTTTACATGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTAACACGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAA ] [-] EMBL CD199717 [ AAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTTTTGTTTACATGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTAACACGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAA ] [-] EMBL CD199652 [ AAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTCTTGTTTACATGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTAACACGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAA ] [-] EMBL CD062610 [ CTTTGTTTTGTTTACATGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTTTAGGCTCTGGCTAATGATCTCCGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAACCCCCCCGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAAATTTCTTCTC ] [-] EMBL CD190415 [ GTGAAGCTGGACTG TTCCTTGTCAAGCAGATGAAGTACNACGTTGTATAAANATTGAAGGGTTATTCCAAGAAGAGGTGGCTAAATTTCTTCTCAGTAAGGGGTTNTGAGAGTTGTATAAAAGTAATCATGTATATACTAAATAAACAACATTCTCGCTAACAGTTTTATTCAATAACAGCTTCATCCCACGGTCCATGAATAGTCCTTTTAATTTTCTGCATTCTTAATAAGTAACACGGTCCAGCAAAATTAATACACAGAGTCGATGTTATGAGTACGCAAAGAAAGATGCATCTATATTCAAATGATACTTCATTGTAAACTATCGGCCAAGCACTCAGAAGAGTTGTAGAACCAGATAATATGGTTAAGCATATTTGTGCTCGATCACCTCCGTTATTGCGAAACCTTCTTGTTAATGCTGGCCATAATGCTAATAAAGTGACGGCAGTGGAAAGCAATGCGAAAGTATGATAAGGGCCAGGTAGA ] [+] EMBL CD191198 [ GAAACCTTCTTGTTAATGCTGGCCATAATGCTAATAAAGTGACGGCAGTGGAAAGCAATGCGAAAGTATGATAAGGGCCAGGTAGACGACTAGCCAAGCAGAGAGCAGCTAACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATCCCC ] [+] EMBL CD201992 [ TATGATAAGGGCCAGGTAGACGACTAGCCAAGCAGAGAGCAGCTAACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATGCCCTTTCCAATGAGTCTTATAATCAAAACATGTCCAATACACAAGAAGAAAAAAGGTACACATGGCGTATATAGAGTCCGTGCTTACGCTCGATAGGAGAGAATGCAGAATAGGAGCAAGCAGAAAGCAAAATGTAAAAAATACCACGCCCGACTTGATTTCAGGTATGACTTTATGAAATTGTCTTTCATTTCCCTCTTTCATTGACCAAAACATGGCATACCCAGTAGTTATTAAGAAGAAAAGGTAAACATTGAGATGCTGTGGAGAAATCCAACCGAATAGTAGGTAAAAATAGATAATTACAAGCAAAGACAAACAACAGAGTTGTTGATAAATGCTGCCAGCAGCGATTATAACATTACGTGCTCGAAGTTTGGGTAGAAAC] consensusID : consensus_9966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [TTCTTCTCAGTAAGGGGTTTTGAGAGTTGTATAAAAGTAATCATGTATATACTAAATAAACAATATTCTCGCTAACAGTTTTATTCAATAACAGCTTCATCCCACGGTCCATGAATAGTCCTGTTACAAAGAAAATCGAAAATTTATGAGGAATTGTGATTATGCAATATGAAATTAAGTTTGTTTGTCAGGATTTATGTCGTTTATTGTGCATGTGTCATTGCAGTTTTGAATGAAGCACTAATTTTACACAGTAGCTTGTTTATATAAACGAACCGACCCTAAACATACACAAGCATCATTGTGAAAACCGATGGTACCAGAGTCATGTCGTACACAACAAAGATCTCAAACGTCTATAATAACGTGGTACTTTTTGACCAAAGACTACTAAGTGATTCTATCCAATCGATGTCAAATGATAGATTGTAACTGGTGCAGGATCATATGAC-AAAAAAAACTCATGCTTGTACTTGGAAAATCTCTGAAAGATAAAAATACTGAATTTTGTAACAGCTTAACAAGTTATGAGTATTCAGAATTTGTAAGAAAAAAAAGTTATCATGATAAATGCGATTTGGAATCCAACTAGCCGATTGACTCACGAACCTTTTTATTTTCTGCATTCTTAATAAGTAACACGGTCCAGCAAAATTATACACAGAGTCGATGTTATGAGTACGCA] [+] EMBL BF936744 [TTCTTCTCAGTAAGGGGTTTTGAGAGTTGTATAAAAGTAATCATGTATATACTAAATAAACAATATTCTCGCTAACAGTTTTATTCAATAACAGCTTCATCCCACGGTCCATGAATAGTCCTGTTACAAAGAAAATCGAAAATTTATGAGGAATTGTGATTATGCAATATGAAATTAAGTTTGTTTGTCAGGATTTATGTCGTTTATTGTGCATGTGTCATTGCAGTTTTGAATGAAGCACTAATTTTACACAGTAGCTTGTTTATATAAACGAACCGACCCTAAACATACACAAGCATCATTGTGAAAACCGATGGTACCAGAGTCATGTCGTACACAACAAAGATCTCAAACGTCTATAATAACGTGGTACTTTTTGACCAAAGACTACTAAGTGATTCTATCCAATCGATGTCAAATGATAGATTGTAACTGGTGCAGGATCATATGAC AAAAAAAACTCATGCTTGTACTTGGAAAATCTCTGAAAGATAAAAATACTGAATTTTGTAACAGCTTAACAAGTTATGAGTATTCAGAATTTGTAAGAAAAAAAAGTTATCATGATAAATGCGATTTGGAATCCAACTAGCCGATTGACTCACGAACCTTTTTATTTTCTGCATTCTTAATAAGTAACACGGTCCAGCAAAATTATACACAGAGTCGATGTTATGAGTACGCA] [-] EMBL CD126627 [ AGTTTGTTTGTCAGGATTTATGTCGTTTATTGTGCATGTGTCATTGCAGTTTTGAATGAAGCACTAATTTTACACAGTAGCTTGTTTATATAAACGAACCGACCCTAAACATACACAAGCATCATTGTGAAAACCGATGGTACCAGAGTCATGTCGTACACAACAAAGATCTCAAACGTCTATAATAACGTGGTACTTTTTGACCCAAGACTACTAAGTGATTCTATCCCATCGATGTCAAATGATAGATTGTAACTGGTGCAGGATCATATGACAAAAAAAAACTCATGCTTGTACTTGGGAAATCTCTGAAAGATCAAAATACTGAATTTTGTCACAGCTTCAC AGTTATGAGTATTCAG ATCTGTAAGAAAAAAAA ] consensusID : consensus_9966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TAACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATGCCCTTTCCAATGAGTCTTATAATCAAAACATGTCCAATACACAAGAAGAAAAAAAGTACACATGGCGTATATAGAGTCCGTGCTTACGCTCGATAGGAGAGAATGCAGAATAGGAGCAAGCAGTAAGCAAAATGTAAAAAATACCACGCCCGACTTGATTTCAGGTATGACAACAGAGTTGT] [+] EMBL CD170063 [TAACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATGCCCTTTCCAATGAGTCTTATAATCAAAACATGTCCAATACACAAGAAGAAAAAAAGTACACATGGCGTATATAGAGTCCGTGCTTACGCTCGATAGGAGAGAATGCAGAATAGGAGCAAGCAGTAAGCAAAATGTAAAAAATACCACGCCCGACTTGATTTCAGGTATGACAACAGAGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9966#0 TAAATCATTTATTCAGTGATAAGCTTAGGGAATCGAAGTGAATTCTTTGTTTTGTTTACA 60 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 ------------------------------------------------------------ consensus_9966#0 TGTTTAGGAAAGAATGACAACTTTTCTTTTACAATATTATAGGCTCTGGCTAATGATCTC 120 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 ------------------------------------------------------------ consensus_9966#0 CGGACGCTTCTTCAACCGAAATGTGAAGCTGGACTGTTTCTTTGTCAAGCAGATGAAGTA 180 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 ------------------------------------------------------------ consensus_9966#0 ACACGTTGTATAAAAATTGAAGGGTTATTCCAAGAAGAGGTGGCTAAATTTCTTCTCAGT 240 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 -------------------------------------------------TTCTTCTCAGT 11 consensus_9966#0 AAGGGGTTNTGAGAGTTGTATAAAAGTAATCATGTATATACTAAATAAACAACATTCTCG 300 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 AAGGGGTTTTGAGAGTTGTATAAAAGTAATCATGTATATACTAAATAAACAATATTCTCG 71 consensus_9966#0 CTAACAGTTTTATTCAATAACAGCTTCATCCCACGGTCCATGAATAGTCCTTTTAATTTT 360 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 CTAACAGTTTTATTCAATAACAGCTTCATCCCACGGTCCATGAATAGTCCTGTTA----C 127 consensus_9966#0 CTGCATTCTTAATAAGTAACACGGTCCAGCAAAATTAATACACAGAGTCGATGTTATGAG 420 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 AAAGAAAATCGAAAATTTATGAGGAATTGTGATTATGCAATATGAAATTAAGTTT----G 183 consensus_9966#0 TACGCAAAGAAAGATGCATCTATATTCAAATGATACTTCATTGTAAACTATCGGCCAAGC 480 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 TTTGTCAGGATTTATGTCGTTTATTGTGCATGTGTCATTGCAGTTTTGAATGAAGCACTA 243 consensus_9966#0 ACTCAGAAGAGTTGTAGAACCAGATAATATGGTTAAGCATATTTGTGCTCGATCACCTCC 540 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 ATTTTACACAGTAGCTTGTTTATATAAACGAACCGACCCTAAACATACACAAGCATCATT 303 consensus_9966#0 GTTATTGCGAAACCTTCTTGTTAATGCTGGCCATAATGCTAATAAAGTGACGGCAGTGGA 600 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 GTGAAAACCGATGGTACCAG--AGTCATGTCGTACACAACAAAGATCTCAAACGTCTATA 361 consensus_9966#0 AAGCAATGCGAAAGTATGATAAGGGCCAGGTAGACGACTA-GCCAAGCAGAGAGCAGCTA 659 consensus_9966#2 ----------------------------------------------------------TA 2 consensus_9966#1 ATAACGTGGTACTTTTTGACCAAAGACTACTAAGTGATTCTATCCAATCGATGTCAAATG 421 * consensus_9966#0 ACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATCCCCTTTCCAAT 719 consensus_9966#2 ACAAAGCAGAACTCAGAGAAATAGTATTTGACCCAGGCTTTCGAGGATGCCCTTTCCAAT 62 consensus_9966#1 ATAGATTGTAACT-GGTGCAGGATCATATGACAAAAAAAACTCATGCTTGTACTTGGAAA 480 * * * **** * * * * ** **** * * * * ** ** consensus_9966#0 GAGTCTTATAATCAAAACATGTCCAATACACAAGAAGAAAAAAGGTACACATGGCGTATA 779 consensus_9966#2 GAGTCTTATAATCAAAACATGTCCAATACACAAGAAGAAAAAAAGTACACATGGCGTATA 122 consensus_9966#1 ATCTCTGAAAGATAAAAATACTGAATTTTGTAACAGCTTAACAAGT---TATGA-GTATT 536 *** * * **** * * * ** * ** * ** *** **** consensus_9966#0 TAGAGTCCGTGCTTACGCTCGATAGGAGAGAATGCAGAATAGGAGCAAGCAGAAAGCAAA 839 consensus_9966#2 TAGAGTCCGTGCTTACGCTCGATAGGAGAGAATGCAGAATAGGAGCAAGCAGTAAGCAAA 182 consensus_9966#1 CAGAATTTGTAA--------GAAAAAAAAGTTATCATGATAAATGCGATTTGGAATCCAA 588 *** * ** ** * * ** ** *** ** * * ** * ** consensus_9966#0 ATGTAAAAAATAC-CACGCCCGACTTGATTTCAGGTATGACTTTATGAAATTGTCTTTCA 898 consensus_9966#2 ATGTAAAAAATAC-CACGCCCGACTTGATTTCAGGTATGAC--AACAGAGTTGT------ 233 consensus_9966#1 CTAGCCGATTGACTCACGAACCTTTTTATTTTCTGCATTCTTAATAAGTAACACGGTCCA 648 * * ** **** * ** **** * ** consensus_9966#0 TTTCCCTCTTTCATTGA-CCAAAACATGGCATACCCAGTAGTTATTAAGAAGAAAAGGTA 957 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 GCAAAATTATACACAGAGTCGATGTTATGAGTACGCA----------------------- 685 consensus_9966#0 AACATTGAGATGCTGTGGAGAAATCCAACCGAATAGTAGGTAAAAATAGATAATTACAAG 1017 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 ------------------------------------------------------------ consensus_9966#0 CAAAGACAAACAACAGAGTTGTTGATAAATGCTGCCAGCAGCGATTATAACATTACGTGC 1077 consensus_9966#2 ------------------------------------------------------------ consensus_9966#1 ------------------------------------------------------------ consensus_9966#0 TCGAAGTTTGGGTAGAAAC 1096 consensus_9966#2 ------------------- consensus_9966#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||