Prosite

This module provides code to work with the prosite.dat file from Prosite. http://www.expasy.ch/prosite/

Tested with: Release 15.0, July 1998 Release 16.0, July 1999 Release 17.0, Dec 2001

Classes: Record Holds Prosite data. PatternHit Holds data from a hit against a Prosite pattern. Iterator Iterates over entries in a Prosite file. Dictionary Accesses a Prosite file using a dictionary interface. ExPASyDictionary Accesses Prosite records from ExPASy. RecordParser Parses a Prosite record into a Record object.

_Scanner Scans Prosite-formatted data. _RecordConsumer Consumes Prosite data to a Record object.

Functions: scan_sequence_expasy Scan a sequence for occurrences of Prosite patterns. index_file Index a Prosite file for a Dictionary. _extract_record Extract Prosite data from a web page. _extract_pattern_hits Extract Prosite patterns from a web page.