thetaw

PURPOSE

THETAW - Watterson's theta

SYNOPSIS

function [t,tvar] = thetaw(aln,fromS,persite)

DESCRIPTION

THETAW - Watterson's theta

Watterson, G. (1975) On the number of segragating sites in genetical models without recombination. Theoretical Population Biology, 7, 256–276.
Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595.

CROSS-REFERENCE INFORMATION

This function calls:

countsegregatingsites COUNTSEGREGATINGSITES - Counts segregating sites

This function is called by:

estimatetheta ESTIMATETHETA - Estimate theta
faywu00h_test FAYWU00H - Compute Fay and Wu's H statistic
fuli93dsfs_test FULI93DS - Fu and Li's D* and F* tests of neutrality
tajima89d_test TAJIMA89D_TEST - Tajima's Test of Neutrality