[BiO BB] how to fetch sequences from web
Joe Landman
landman at scientificappliance.com
Sun Feb 3 15:55:20 EST 2002
I might suggest also looking at the NCBI Entrez site at
http://www.ncbi.nlm.nih.gov/Entrez/ or batch Entrez at
http://www.ncbi.nlm.nih.gov/entrez/batchentrez.cgi?db=Nucleotide
For example, I used the accession BG938025 and put this into the search
for text area. I selected nucleotide. I obtained a hit from the
database, and changed the display from summary to FASTA and then clicked
on the display button. You can also click on the save button to make a
local copy.
Batch Entrez lets you do basically the same thing, but with a set of
accession numbers.
Joe
> Quoting Peri Suraj <bioinfo_india at yahoo.com>:
>
> > Hi group,
> > Do you know if there is any tool which can fetch
> > fasta formated sequences based on the accession
> > numbers list what i have with me.
> > I know that we can do this in GCG and EMBOSS.
> > I want a web based facility, because i do not have
> > access to EMBOSS or GCG.
> > Please reply soon !
> > Thank you in advance
> > Suraj Peri
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