[BiO BB] perl script

[hz5 at njit.edu]

Hi, I have a tool that retrieve genomice context sequence of a gene 
by giving coordinate. So if you list of genes are for the purpose
of retrieving DNA sequences, you can try my tool at
http://cag.tolias.phri.org/EZRetrieve
use the multiple retrieval tool, just paste all the Ids there.

The result also give you information about the ATGC content and chromosome
, contig informations and link out to genbank searches.

Hope help!
Haibo

Quoting kiran challapalli <bioinformaticsckk at yahoo.co.in>:

> Hi everyone,
> I have text file with list of accession Ids for NcBI
> entries. I want to know wether any script available on
> the net to retieve the entries and store on my
> computer in text format. I want to do the same job
> with other databases like swissprot and embl.
> I know that atleast NCBI has the facility to upload
> the text file. But i want to make the job simpler.
> Any suggestions or ideas?
> Thanks in advance,
> Kiran
> 
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Haibo Zhang
Computational Biology, NJIT & Rutgers University
http://afs13.njit.edu/~hz5