[BiO BB] Run server program remotely?

[newgene at bigfoot.com]

Hi, group,
            I have an account to access our server equipped with many 
popular sequence analysis programs like GCG package, etc. I can run those 
tools from the terminal of server side. I am wondering if possible I can 
run those programs remotely just like my local programs, but using server's 
power. Thus, I don't need to upload my data files to server manually and 
then run it from server terminal. I just need send the request to server, 
then server will upload the needed local data file automatically and run 
the program ,then send me back the result. Sort of a "local program simulator".
           Is there a tool can do something like above?

Thanks.

CL