[BiO BB] (no subject) sequence searching mailing list?

Dan Bolser dmb at mrc-dunn.cam.ac.uk
Fri Aug 22 11:55:53 EDT 2003

Sorry for not answering the question, but I was wondering
what the next step for the sequence search mailing list
should be? Should I start a project and use the mailing list?


P Sravan Kumar. PAsst said:
> Hello all,
> 	I have a query:
> 	When we are running psipred the program takes the file of a
> sequence as input , run and give result ;
> Ex: x.seq--> x.horiz,x.ss,x.ss2,x.blast: (3 iterations of PSIBLAST/PSIPRED V) : 3
> seconds:
> Actually I want to run psipred on a set of sequences loaded in a file at a time
> one by one.(Here the sequences will be in a file and should be read one by one.)
> Please provide me with a solution regarding the query and suggest me possible ways
> which will complete the task in a little time. May be at the rate of 1 or  min for
> 50 sequences.
> A quick reply if possible is appreciated.
> Thank you all,
> Yours sincerely,
> sravan.
> ========================
> P. Sravana Kumar
> c/o Dr. Shekhar C. Mande,
> Laboratory of Structural Biology,
> Center for DNA Fingerprinting and Diagnostics,
> ECIL Road,
> Nacharam 500 076,
> Hyderabad,
> India.
> Ph:  Lab: Direct: 040-27171442
>      General: 040-27151344-1400
> e-mail:  sravan at www.cdfd.org.in
> =========================
> _______________________________________________
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