[BiO BB] guidance needed

[Svensson, B.A.T. (HKG)]

Swissprot: http://www.expasy.org/expasy_urls.html
GeneBank: http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
EMBL: http://www.ebi.ac.uk/embl/Access/index.html


-----Original Message-----
From: SH Sharma
To: Svensson, B.A.T. (HKG)
Sent: 2003-12-30 19:02
Subject: Re: [BiO BB] guidance needed

Respected Sir,
We are thankful to the valuable advice we are receiving.
IS IT POSSIBLE TO REMOTELY SEARCH AND RETRIEVE DATA FROM THE EMBL OR
GENBANK OR SWISSPROT DATATBASE USING OUR OWN RETRIEVAL SYSTEM. (we wish to
develo our own retrieval system even though Entrez and several others are
available) If yes then do we have to take permission or need to pay.
If no then is it that we have to necessarily downloading the respective
database.

----- Original Message -----
From: "Svensson, B.A.T. (HKG)" <B.A.T.Svensson at lumc.nl>
To: <bio_bulletin_board at bioinformatics.org>
Cc: "''SH Sharma ' '" <sharmash at pn2.vsnl.net.in>
Sent: Tuesday, December 30, 2003 5:14 PM
Subject: RE: [BiO BB] guidance needed


> Since the guys who asked the question are computer engineering
students,
> they would (read: should) rather use a RDBMS to store data locally.
>
> -----Original Message-----
> From: Venkata Satagopam
> To: bio_bulletin_board at bioinformatics.org; 'SH Sharma '
> Sent: 2003-12-29 23:49
> Subject: RE: [BiO BB] guidance needed
>
> Its is better to store the data locally, and parse the data
> by using a parser and store the indices in token tables (indexing).
> Use these indices to retrieve the data.
>
> "Svensson, B.A.T. (HKG)" <B.A.T.Svensson at lumc.nl> wrote:
>
> Question on (2):
>
> Do you want to store and process data localy?
>
> -----Original Message-----
> From: SH Sharma
> To: bio_bulletin_board at bioinformatics.org
> Sent: 2003-12-25 04:59
> Subject: [BiO BB] guidance needed
>
> hi we are computer engineering students developing a a sequence
> retreival system to retreive data from genbank.
> This is how we have thought of
> (1) first we will have our software running on apache web server. The
> webserver will accept http requests from the web browsers from
different
> clients. To handle this we will be running PHP script on the web
server.
> (2) on getting a request now we want our software to access data from
> GenBANK. How to achieve this. what technolgy is needed to get data
from
> a remote bioinformatics database such as Genbank or swiss prot and
save
> the data in the local database.
>
> We would be thankful if you can guide us.
>
> Neeraj sharma
> B.E. computer engineering
> university of pune
> india
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>
>
>
> Venkata Pardhasaradhi Satagopam,
> Bioinformatician,
> Fritz-Frey-Str 8, 69121 Heidelberg, Germany.
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>
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