[BiO BB] guidance needed

Svensson, B.A.T. (HKG) B.A.T.Svensson at lumc.nl
Tue Dec 30 06:44:38 EST 2003

Since the guys who asked the question are computer engineering students,
they would (read: should) rather use a RDBMS to store data locally.

-----Original Message-----
From: Venkata Satagopam
To: bio_bulletin_board at bioinformatics.org; 'SH Sharma '
Sent: 2003-12-29 23:49
Subject: RE: [BiO BB] guidance needed

Its is better to store the data locally, and parse the data
by using a parser and store the indices in token tables (indexing).
Use these indices to retrieve the data.

"Svensson, B.A.T. (HKG)" <B.A.T.Svensson at lumc.nl> wrote:

Question on (2):

Do you want to store and process data localy?

-----Original Message-----
From: SH Sharma
To: bio_bulletin_board at bioinformatics.org
Sent: 2003-12-25 04:59
Subject: [BiO BB] guidance needed

hi we are computer engineering students developing a a sequence
retreival system to retreive data from genbank.
This is how we have thought of
(1) first we will have our software running on apache web server. The
webserver will accept http requests from the web browsers from different
clients. To handle this we will be running PHP script on the web server.
(2) on getting a request now we want our software to access data from
GenBANK. How to achieve this. what technolgy is needed to get data from
a remote bioinformatics database such as Genbank or swiss prot and save
the data in the local database.

We would be thankful if you can guide us.

Neeraj sharma 
B.E. computer engineering
university of pune
BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org

Venkata Pardhasaradhi Satagopam,
Fritz-Frey-Str 8, 69121 Heidelberg, Germany.
Tel. (Land) : +49 (0)6221 729 667
(Mobile): +49 (0)179 792 7494


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