[BiO BB] Affymetrix Data

Rohan Woodley rgwoodley at sprynet.com
Thu Jan 30 21:24:31 EST 2003


If  I am understanding your questions correctly, I think you would need 
the Chip Library file and the data file.
If that is the case, I have written a program the does the cross 
referencing that can be modified to suit your needs.
For my particular need, I did not look for perfect match intensities, 
however I am sure the program can be extended to take it
into consideration.

Let me know


a.craig wrote:

>Dear List,
>Does anyone know of any publicly available code for extracting individual
>perfect match and mismatch intensities for each probe pair of an affymetrix
>Best wishes,
>Andrew Craig
>-----Original Message-----
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>Today's Topics:
>   1. ACM PPDP'03 Call for Papers (Frank D. Valencia)
>Message: 1
>Date: Thu, 30 Jan 2003 14:17:49 +0100
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>Subject: [BiO BB] ACM PPDP'03 Call for Papers
>Reply-To: bio_bulletin_board at bioinformatics.org
>Dear all,
>Apologies for multiple copies of this message. Please circulate the 
>following call for papers to colleagues. 
>Best wishes,
>  Frank D. Valencia. 
>			   Call for Papers
>	    Fifth ACM-SIGPLAN International Conference on
>	 Principles and Practice of Declarative Programming
>		  Uppsala, Sweden, 27-29 August 2003
> Submission      29 March 2003
> Notification    12 May   2003
> Final Version   13 June  2003
> PPDP 2003: http://www.it.uu.se/ppdp03/
> PLI 2003:  http://www.it.uu.se/pli03/ 
> PPDP:      http://pauillac.inria.fr/~fages/PPDP/.
>TOPICS (Not exhaustive): Logic and Constraint Programming; Functional
> Programming; Object-Oriented Programming; Concurrent Extensions;
> Mobile Computing; Integration of Paradigms; Proof Theoretic and
> Semantic Foundations; Program Design and Development; Type and Module
> Systems; Program Analysis and Verification; Program Transformation;
> Abstract Machines and Compilation; Programming Environments; and
> Application of Declarative Programming.
>CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University
>   http://www.csd.uu.se/~kostis, email: kostis at it.uu.se
>PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique
>   http://www.lix.polytechnique.fr/Labo/Dale.Miller, 
>   email: Dale.Miller at inria.fr
>  Maria Alpuente,           Univ. Politecnica de Valencia,     ES
>  Alessandra Di Pierro,     Univ. of Pisa,                     IT
>  Masami Hagiya,            Univ. of Tokyo,                    JP
>  Fergus Henderson,         Univ. of Melbourne,                AU
>  Alberto Momigliano,       Univ. of Leicester,                UK
>  Benjamin Pierce,          Univ. of Pennsylvania,             US
>  C.R. Ramakrishnan,        SUNY Stony Brook,                  US
>  Mario Rodriguez Artalejo, Univ. Complutense,                 ES
>  Amr Sabry,                Univ. of Indiana,                  US
>  Konstantinos Sagonas,     Uppsala University,                SW
>  Frank Valencia,           Uppsala University,                SW
> Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002).
>SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the
>use of logical formalisms and methods for analyzing, specifying, and
>performing computations.  Of general interest are all aspects
>surrounding declarative programming paradigms such as logic
>programming, functional logic programming, and constraint programming.
>Topics of more specific interest are enhancements to such formalisms
>with mechanisms for concurrency, mobility, modularity,
>object-orientation, and static analysis, as well as the fuller
>exploitation of the programming-as-proof-search framework through new
>designs and improved implementation methods.  At the level of
>methodology, the use of logic based principles in the design of tools
>for program development, analysis, and verification relative to all
>programming paradigms is of interest.  Papers related to the use of
>declarative paradigms and tools in industry and education are
>especially solicited.  This list is not exhaustive: submissions
>related to new and interesting ideas relating broadly to declarative
>programming are encouraged.  Prospective authors are welcome to
>communicate with the Program Chair about the suitability of a specific
>PAPER SUBMISSIONS: Submissions must be made on or before 29 March
>2003, noon Central European Time and must be no more than 12 pages
>(including bibliography and appendices) and in standard ACM conference
>format: detailed formatting guidelines are available at
>http://www.acm.org/sigs/pubs/proceed/template.html, along with
>formatting templates or style files for LaTeX, Word Perfect, and Word.
>Proceedings will be published by ACM Press.  Authors of accepted
>papers will be required to sign the ACM copyright form.  Submissions
>will be carried out electronically via the Web via a link found at the
>conference web page.  Papers must be submitted in either PDF format or
>as PostScript documents that are interpretable by Ghostscript.  Papers
>must describe original, previously unpublished work that has not been
>simultaneously submitted for publication elsewhere.  They must be
>written in English, must have a cover page with an abstract of up to
>200 words, keywords, postal and electronic mailing addresses, and
>phone and fax numbers of the corresponding author.  Authors who wish
>to provide additional material to the reviewers beyond the 12-page
>limit can do so in clearly marked appendices: reviewers are not
>required to read such appendices.  Submissions that do not meet these
>guidelines may not be considered.
>CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation
>meeting known as Principles, Logics and Implementations of high-level
>programming languages (PLI 2003) which includes the ACM SIGPLAN
>International Conference on Functional Programming (ICFP 2003).  PLI
>will run from 25 - 29 August 2003.  The meetings will take place on
>the Uppsala University campus.
>AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated
>workshops.  Details about the submission of proposals are available
>from the PLI 2003 web site.  The deadline for workshop proposals is 14
>February 2003.
>STUDENT ATTENDEES: Students who have a paper accepted for the
>conference are offered student membership in SIGPLAN free for one
>year.  As members of SIGPLAN they may apply for travel fellowships
>from the PAC fund.

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