[BiO BB] Affymetrix Data

A.J. Rossini rossini at blindglobe.net
Thu Jan 30 12:30:43 EST 2003

Look at the BioConductor suite, which does that (and lets you
"redesign" probe <-> gene mappings, should you wish), as well as
having a range of normalization algorithms...


>>>>> "ac" == a craig <a.craig> writes:

    ac> Dear List,
    ac> Does anyone know of any publicly available code for extracting individual
    ac> perfect match and mismatch intensities for each probe pair of an affymetrix
    ac> chip.

    ac> Best wishes,

    ac> Andrew Craig

    ac> -----Original Message-----
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    ac> Sent: Thursday, January 30, 2003 5:01 PM
    ac> To: bio_bulletin_board at bioinformatics.org
    ac> Subject: BiO_Bulletin_Board digest, Vol 1 #395 - 1 msg

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    ac> Today's Topics:

    ac>    1. ACM PPDP'03 Call for Papers (Frank D. Valencia)

    ac> --__--__--

    ac> Message: 1
    ac> Date: Thu, 30 Jan 2003 14:17:49 +0100
    ac> From: "Frank D. Valencia" <frankv at it.uu.se>
    ac> To: Corrado Priami <priami at dit.unitn.it>
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    ac> 	ridg at cs.uchicago.edu
    ac> Subject: [BiO BB] ACM PPDP'03 Call for Papers
    ac> Reply-To: bio_bulletin_board at bioinformatics.org

    ac> Dear all,

    ac> Apologies for multiple copies of this message. Please circulate the 
    ac> following call for papers to colleagues. 

    ac> Best wishes,
    ac>   Frank D. Valencia. 

    ac> -------------------
    ac> 			   Call for Papers
    ac> 	    Fifth ACM-SIGPLAN International Conference on
    ac> 	 Principles and Practice of Declarative Programming
    ac> 		  Uppsala, Sweden, 27-29 August 2003

    ac>  Submission      29 March 2003
    ac>  Notification    12 May   2003
    ac>  Final Version   13 June  2003
    ac> WEB SITES 
    ac>  PPDP 2003: http://www.it.uu.se/ppdp03/
    ac>  PLI 2003:  http://www.it.uu.se/pli03/ 
    ac>  PPDP:      http://pauillac.inria.fr/~fages/PPDP/.

    ac> TOPICS (Not exhaustive): Logic and Constraint Programming; Functional
    ac>  Programming; Object-Oriented Programming; Concurrent Extensions;
    ac>  Mobile Computing; Integration of Paradigms; Proof Theoretic and
    ac>  Semantic Foundations; Program Design and Development; Type and Module
    ac>  Systems; Program Analysis and Verification; Program Transformation;
    ac>  Abstract Machines and Compilation; Programming Environments; and
    ac>  Application of Declarative Programming.

    ac> CONFERENCE CHAIR: Konstantinos Sagonas, Uppsala University
    ac>    http://www.csd.uu.se/~kostis, email: kostis at it.uu.se

    ac> PROGRAM CHAIR: Dale Miller, INRIA/Futurs & Ecole polytechnique
    ac>    http://www.lix.polytechnique.fr/Labo/Dale.Miller, 
    ac>    email: Dale.Miller at inria.fr

    ac>   Maria Alpuente,           Univ. Politecnica de Valencia,     ES
    ac>   Alessandra Di Pierro,     Univ. of Pisa,                     IT
    ac>   Masami Hagiya,            Univ. of Tokyo,                    JP
    ac>   Fergus Henderson,         Univ. of Melbourne,                AU
    ac>   Alberto Momigliano,       Univ. of Leicester,                UK
    ac>   Benjamin Pierce,          Univ. of Pennsylvania,             US
    ac>   C.R. Ramakrishnan,        SUNY Stony Brook,                  US
    ac>   Mario Rodriguez Artalejo, Univ. Complutense,                 ES
    ac>   Amr Sabry,                Univ. of Indiana,                  US
    ac>   Konstantinos Sagonas,     Uppsala University,                SW
    ac>   Frank Valencia,           Uppsala University,                SW

    ac>  Paris (1999), Montreal (2000), Firenze (2001), Pittsburgh (2002).

    ac> SCOPE OF THE CONFERENCE: PPDP 2003 aims to stimulate research in the
    ac> use of logical formalisms and methods for analyzing, specifying, and
    ac> performing computations.  Of general interest are all aspects
    ac> surrounding declarative programming paradigms such as logic
    ac> programming, functional logic programming, and constraint programming.
    ac> Topics of more specific interest are enhancements to such formalisms
    ac> with mechanisms for concurrency, mobility, modularity,
    ac> object-orientation, and static analysis, as well as the fuller
    ac> exploitation of the programming-as-proof-search framework through new
    ac> designs and improved implementation methods.  At the level of
    ac> methodology, the use of logic based principles in the design of tools
    ac> for program development, analysis, and verification relative to all
    ac> programming paradigms is of interest.  Papers related to the use of
    ac> declarative paradigms and tools in industry and education are
    ac> especially solicited.  This list is not exhaustive: submissions
    ac> related to new and interesting ideas relating broadly to declarative
    ac> programming are encouraged.  Prospective authors are welcome to
    ac> communicate with the Program Chair about the suitability of a specific
    ac> topic.

    ac> PAPER SUBMISSIONS: Submissions must be made on or before 29 March
    ac> 2003, noon Central European Time and must be no more than 12 pages
    ac> (including bibliography and appendices) and in standard ACM conference
    ac> format: detailed formatting guidelines are available at
    ac> http://www.acm.org/sigs/pubs/proceed/template.html, along with
    ac> formatting templates or style files for LaTeX, Word Perfect, and Word.
    ac> Proceedings will be published by ACM Press.  Authors of accepted
    ac> papers will be required to sign the ACM copyright form.  Submissions
    ac> will be carried out electronically via the Web via a link found at the
    ac> conference web page.  Papers must be submitted in either PDF format or
    ac> as PostScript documents that are interpretable by Ghostscript.  Papers
    ac> must describe original, previously unpublished work that has not been
    ac> simultaneously submitted for publication elsewhere.  They must be
    ac> written in English, must have a cover page with an abstract of up to
    ac> 200 words, keywords, postal and electronic mailing addresses, and
    ac> phone and fax numbers of the corresponding author.  Authors who wish
    ac> to provide additional material to the reviewers beyond the 12-page
    ac> limit can do so in clearly marked appendices: reviewers are not
    ac> required to read such appendices.  Submissions that do not meet these
    ac> guidelines may not be considered.

    ac> CONFERENCE VENUE AND RELATED EVENTS: PPDP 2003 is part of a federation
    ac> meeting known as Principles, Logics and Implementations of high-level
    ac> programming languages (PLI 2003) which includes the ACM SIGPLAN
    ac> International Conference on Functional Programming (ICFP 2003).  PLI
    ac> will run from 25 - 29 August 2003.  The meetings will take place on
    ac> the Uppsala University campus.

    ac> AFFILIATED WORKSHOPS: Proposals are solicited for PLI 2003 affiliated
    ac> workshops.  Details about the submission of proposals are available
    ac> from the PLI 2003 web site.  The deadline for workshop proposals is 14
    ac> February 2003.

    ac> STUDENT ATTENDEES: Students who have a paper accepted for the
    ac> conference are offered student membership in SIGPLAN free for one
    ac> year.  As members of SIGPLAN they may apply for travel fellowships
    ac> from the PAC fund.

    ac> -- 
    ac> =========================================================================
    ac> Frank D. Valencia
    ac> PostDoctoral Researcher in Computer Science
    ac> Uppsala University,  Sweden.
    ac> office phone: +46 18 471 1030
    ac> mobile: +46 7358 20376
    ac> e-mai: frankv at it.uu.se
    ac> http://user.it.uu.se/~frankv
    ac> ==========================================================================

    ac> --__--__--

    ac> _______________________________________________
    ac> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
    ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

    ac> End of BiO_Bulletin_Board Digest
    ac> _______________________________________________
    ac> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
    ac> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

A.J. Rossini				Rsrch. Asst. Prof. of Biostatistics
U. of Washington Biostatistics		rossini at u.washington.edu	
FHCRC/SCHARP/HIV Vaccine Trials Net	rossini at scharp.org
-------------- http://software.biostat.washington.edu/ ----------------
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