[BiO BB] Tree/hierarchcal clustering software?
Iddo Friedberg
idoerg at burnham.org
Mon Nov 17 13:32:28 EST 2003
Hi,
(Apologies for cross-posting).
I have data in the form of a distance matrix (well, similarity, but
easily convertible). I would like a hierarchical clustering software which:
1) Has a good number of amalgamation rules. I want to throw as many
things as I can at my data set. A good number of distance rules
(Eucledian, squared, Chebychev etc.) would be nice too.
2) A nice tree display. Failing that, an output in one of the standard
formats which I can display using TreeView, or somesuch.
I know I can use Neighbor from Phylip, I just wondered what else is out
there. Any reply would be helpful.
Thanks,
Iddo
--
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 646 3171
http://ffas.ljcrf.edu/~iddo
--
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 646 3171
http://ffas.ljcrf.edu/~iddo
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