[BiO BB] cell simulation

John G. Hoey, Ph.D. drjohn08318 at yahoo.com
Wed Oct 15 09:25:03 EDT 2003

```..Check out www.bio.com.  There is an interesting article you may want to read.

Mathematical Modeling Predicts Cellular CommunicationMathematical Modeling Predicts Cellular Communication

John G. Hoey, Ph.D.

deepan chakravarthy n <deepan_3356 at yahoo.co.in> wrote:
hi val,
i undestand what u mean , cell metabolism is
highly complex.
we are a group of students ,we just want to get an
insight of the problems and complex nature of cell
simulation software . so we have set out to write a
simplest model of cell that would mimic very few
pathways of cell.

deepan

--- val wrote: > hi deepan,
>
> i wouldn't rush with your cell simulation.
> There are few dozens projects around (google eCell
> and related ones), and even most pretencious ones
> fail in terms of interesting predictions.
> it's understandable. Cell is *not* a bag with
> 10K chemical reactions. So, my suggestion is
> to think twice and formulate your goal - why you
> are going to do this and what you expect to obtain?
> my best for you,
> val
>
>
> ----- Original Message -----
> From: "deepan chakravarthy n"
>
> To:
> Sent: Monday, October 13, 2003 11:58 AM
> Subject: [BiO BB] cell simulation
>
>
> > hello ,
> > i am writing algorithm for a cell
> simulation
> > software.
> >
> > 1)
> > we know complex reactions are involved in cell
> > metabolism.
> > many reversible rxns, non reversible rxns are
> > involved.
> > to calculate the concentration of each component
> at a
> > given instant we have to use complex differential
> > equations.
> > if someone can suggest me some websites or books
> to
> > refer for such calculations plz do it.
> >
> > 2)
> > i have taken my reference cell as E.Coli . where
> can
> > i get the complete set of metabolism rxn involved
> in
> > EColi .(along with
> > the values of equlibrium constants)
> >
> >
> > plese guide me if possible
> >
> >
> >
> > =====
> > ---------------------------------------------
> > deepan chakravarthy n
> > 2nd year,(2nd sem),
> > b.tech(biotech),
> > anna university ,
> > chennai.
> > ph no:
> > hostel:22354862(044)room no205,
> > home:04287-241199,04287244399,
> > ac tech hostel (jh 207),
> > anna university,
> > chennai-25.
> >
> >
>
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> >
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=====
---------------------------------------------
deepan chakravarthy n
2nd year,(2nd sem),
b.tech(biotech),
anna university ,
chennai.
ph no:
hostel:22354862(044)room no205,
home:04287-241199,04287244399,
ac tech hostel (jh 207),
anna university,
chennai-25.

________________________________________________________________________
Yahoo! India Matrimony: Find your partner online.
_______________________________________________
BiO_Bulletin_Board maillist - BiO_Bulletin_Board at bioinformatics.org
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