[BiO BB] hi

Rong Chen rong at bu.edu
Tue Jan 6 12:30:55 EST 2004

Hi Pankaj,

DS Protein Family in DS Modeling may be helpful. Check this web site:  


On Tue, 6 Jan 2004, Pankaj wrote:

> hi all,
> i m a new member of this board.
> i have a 3 protein structures (all taking the same fold) with the
> substrate bound. the residues surrounding the substrate are the active
> site residues. now i have a set of 400 protein sequences which i know
> take the same above mentioned fold. i want to extract the active site
> residues from these 400 sequences. but whatever alignment program i
> use either uses only sequence information or only structure
> information. is there an alignment program which can use both
> structure and sequence information for the alignment of these 400
> sequences on the strcutural template
> _______________________________________________
> BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board

More information about the BBB mailing list