[BiO BB] GeneBank to SwissProt Mapping?

Pamela Culpepper pculpep at hotmail.com
Fri May 14 11:59:38 EDT 2004

Also, grab the LL_tmpl.gz from the refseq/LocusLink directory at 

This file comprises the LocusLink template pages.  Lots of info there, too.


>From: "Svensson, B.A.T. (HKG)" <B.A.T.Svensson at lumc.nl>
>Reply-To: bio_bulletin_board at bioinformatics.org
>To: Bio Bulletin <bio_bulletin_board at bioinformatics.org>
>Subject: Re: [BiO BB] GeneBank to SwissProt Mapping?
>Date: 14 May 2004 16:16:11 +0200
>On Fri, 2004-05-14 at 15:28, Dan Bolser wrote:
> > On 14 May 2004, Svensson, B.A.T. (HKG) wrote:
> >
> > >What data do you have to start with?
> >
> > BIND.... I am thinking that blast will get the job done if I use 
>I don't know about BIND, but if you have refseq, then you will be able
>to fetch the protein identifier (PID) as well as well as the official
>gene symbol from NCBI's data set UniGene (pre-blasted as to say), this
>should be enough to link to your data. If you need help with retrieving
>PID's and gene symbols, let me know and I can make a query in my own
>database to retrieve this data for you - or anything else you need from
>Precisely which EBI dataset would you like to link to?
> > >On Fri, 2004-05-14 at 15:10, Dan Bolser wrote:
> > >> Any body know how to map proteins from the NCBI to proteins from the 
> > >>
> > >> Cheers,
> > >> Dan.
> > >
>BiO_Bulletin_Board maillist  -  BiO_Bulletin_Board at bioinformatics.org

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