[BiO BB] characterization of an incomplete genome

Jicheng Hao jhao at tgen.org
Fri May 14 16:44:47 EDT 2004

Hi there,

    We have assembled a Yesinia pestis genome. However, the genome is
only 95% complete.  We would like to to characterize rearrangements,
large, medium size indels,  repeat differences, gene differences by
comparing it with a known complete genome.

    I would appreciate if anybody could give me any advice or comments.

Jicheng Hao, Ph.D.
Staff Scientist, Bioinformatics
Comparative Genomics Unit
Pathogen Genomics Division 
Translational Genomics Research Institute (TGen) 
602 343 8705 (phone)
480 570 5969 (mobile)
602 343 8740 (fax)
jhao at tgen.org
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