[BiO BB] SWDA

[Ahmed Moustafa]

Ryan,

Regarding your post on 17 September 
(http://bioinformatics.org/pipermail/bio_bulletin_board/2004-September/002100.html), 
your implementation was not incorporated into JAligner, I built the 
source code from scratch from the algorithm in Pavel Pevzner's 
Computational Molecular Biology (as I mentioned to you before), and it 
was already up and running before you voluntarily sent me your code and 
discussed one improvement with me which I acknowledged on the project 
homepage (http://jaligner.sourceforge.net). So it was wrong to declare 
that JAligner was a rework of your code.

Regards,

Ahmed Moustafa