[BiO BB] Re: Extracting blocks of seq alignment

[Mario Albrecht]

You might use ClustalX 1.83:
http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/Top.html

However, be aware of the bug that ClustalX may compute
wrong start and end position numbers for the partial block
sequences. To my knowledge, this numbering bug has not been
fixed yet. But the selected block itself is extracted properly.

  Mario

On Tue, 30 Nov 2004, Goel, Manisha wrote:

> Hi All,
>
> I have been looking for an alignment editor/ script that will extract
> blocks of multiple sequence alignment (when given the residue numbers
> etc.) from a longer multiple sequence alignment.
> Any suggetions will be helpful.
>
> Thanks,
> - Manisha Goel
>
>