[BiO BB] Re: Extracting blocks of seq alignment

Mario Albrecht info at mario-albrecht.de
Tue Nov 30 14:30:25 EST 2004

You might use ClustalX 1.83:

However, be aware of the bug that ClustalX may compute
wrong start and end position numbers for the partial block
sequences. To my knowledge, this numbering bug has not been
fixed yet. But the selected block itself is extracted properly.


On Tue, 30 Nov 2004, Goel, Manisha wrote:

> Hi All,
> I have been looking for an alignment editor/ script that will extract
> blocks of multiple sequence alignment (when given the residue numbers
> etc.) from a longer multiple sequence alignment.
> Any suggetions will be helpful.
> Thanks,
> - Manisha Goel

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