[BiO BB] IMAGE IDs to chromosomal locations
vxg189 at bham.ac.uk
Tue Apr 12 05:06:29 EDT 2005
Thankyou very much for your help, Mr. Govind.
I had gone on this website but this doesnot entertain batch queries and asks for accession numbers to be entered one by one. It is a useful resource provided we are interested in a small number of genes. Since I am dealing with around 700-800 genes, I was interested in something that would allow me to enter the Genbank Accession numbers of all these genes at once and then give me their respective chromosomal locations and Band position. Thanking you again.
Mr. Vibhor Gupta
Research Associate (Chromatin and Gene Expression Group)
Division of Immunity and Infection - Anatomy
Institute of Biomedical Research
University of Birmingham
Birmingham - B15 2TT
Email: v.gupta.1 at bham.ac.uk
Telephone number: 0121-4158684
From: bio_bulletin_board-bounces+v.gupta.1=bham.ac.uk at bioinformatics.org on behalf of govind mk
Sent: Tue 12/04/2005 03:57
To: The general forum at Bioinformatics.Org
Subject: Re: [BiO BB] IMAGE IDs to chromosomal locations
Have a look at this web site.
I hope this helps
--- Vibhor Gupta <vxg189 at bham.ac.uk> wrote:
> Hello all,
> I have been working on the analysis of some
> microarray data. I am at a stage whereby I have a
> selection of genes and I am interested in looking at
> their specific chromosomal locations. Since in the
> GPR files I am only provided with the IMAGE IDs
> (referring to the EST sequence present on the spot),
> I am looking for a software or a database engine
> that provides me with the corresponsing GENBANK IDs
> (or even better, the chromosomal locations). In the
> GAL file I have been provided some Genbank IDs but
> the list is not complete (and so it would be good to
> have a list of Genbank IDs as well). I would be
> grateful to anyone who could help me in this matter.
> Mr. Vibhor Gupta
> Research Associate (Chromatin and Gene Expression
> Division of Immunity and Infection - Anatomy
> Institute of Biomedical Research
> University of Birmingham
> Birmingham - B15 2TT
> Email: v.gupta.1 at bham.ac.uk
> Telephone number: 0121-4158684
> Bioinformatics.Org general forum -
> BiO_Bulletin_Board at bioinformatics.org
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