[BiO BB] IMAGE IDs to chromosomal locations

govind mk mkgovindis at yahoo.com
Tue Apr 12 23:13:22 EDT 2005


Hi vibhor 

Guess you missed the link in the page that allows you
batch queries

http://genome-www5.stanford.edu/cgi-bin/source/sourceBatchSearch

Follow this URL ...allows you to upload a file and get
their corresponding data.

-Govind



--- Vibhor Gupta <vxg189 at bham.ac.uk> wrote:
> Thankyou very much for your help, Mr. Govind. 
>  
> I had gone on this website but this doesnot
> entertain batch queries and asks for accession
> numbers to be entered one by one. It is a useful
> resource provided we are interested in a small
> number of genes. Since I am dealing with around
> 700-800 genes, I was interested in something that
> would allow me to enter the Genbank Accession
> numbers of all these genes at once and then give me
> their respective chromosomal locations and Band
> position. Thanking you again.
>  
> Mr. Vibhor Gupta
> Research Associate (Chromatin and Gene Expression
> Group)
> Division of Immunity and Infection - Anatomy
> Institute of Biomedical Research
> University of Birmingham
> Birmingham - B15 2TT
> Email: v.gupta.1 at bham.ac.uk
> Telephone number: 0121-4158684
>  
> 
> ________________________________
> 
> From:
>
bio_bulletin_board-bounces+v.gupta.1=bham.ac.uk at bioinformatics.org
> on behalf of govind mk
> Sent: Tue 12/04/2005 03:57
> To: The general forum at Bioinformatics.Org
> Subject: Re: [BiO BB] IMAGE IDs to chromosomal
> locations
> 
> 
> 
> 
> Hi Vibhor,
> 
> Have a look at this web site.
> 
> http://source.stanford.edu
> 
> I hope this helps
> Regards
> 
> 
> --- Vibhor Gupta <vxg189 at bham.ac.uk> wrote:
> > Hello all,
> > 
> > I have been working on the analysis of some
> > microarray data. I am at a stage whereby I have a
> > selection of genes and I am interested in looking
> at
> > their specific chromosomal locations. Since in the
> > GPR files I am only provided with the IMAGE IDs
> > (referring to the EST sequence present on the
> spot),
> > I am looking for a software or a database engine
> > that provides me with the corresponsing GENBANK
> IDs
> > (or even better, the chromosomal locations). In
> the
> > GAL file I have been provided some Genbank IDs but
> > the list is not complete (and so it would be good
> to
> > have a list of Genbank IDs as well). I would be
> > grateful to anyone who could help me in this
> matter.
> > Thankyou.
> > 
> > Mr. Vibhor Gupta
> > Research Associate (Chromatin and Gene Expression
> > Group)
> > Division of Immunity and Infection - Anatomy
> > Institute of Biomedical Research
> > University of Birmingham
> > Birmingham - B15 2TT
> > Email: v.gupta.1 at bham.ac.uk
> > Telephone number: 0121-4158684
> > 
> > _______________________________________________
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> >
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> 
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