[BiO BB] Java API for BLAST?
ahmed at users.sourceforge.net
Fri Dec 9 11:33:09 EST 2005
I thought of switching my project to Perl because I found BioPerl had
more functionalities and more "documentation" than BioJava but am trying
first to stay with Java, otherwise will go to BioPerl.
On 12/9/2005 9:45 AM, Joe Landman wrote:
> Hi Ahmed:
> You might look into hooking into the BioPerl bits from Java (RMI I
> think). This shouldn't be too difficult.
> Ahmed Moustafa wrote:
>> Hi All!
>> Is there some sort of a Java package to do BLAST search (remote or
>> local)? I went through BioJava and I could not find something like
>> that, it seemed there was only a parser for the BLAST XML output.
>> Thanks in advance!
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