[BiO BB] Java API for BLAST?

[Joe Landman]

Hi Ahmed:

   You might look into hooking into the BioPerl bits from Java (RMI I 
think).  This shouldn't be too difficult.

Joe

Ahmed Moustafa wrote:
> Hi All!
> 
> Is there some sort of a Java package to do BLAST search (remote or 
> local)? I went through BioJava and I could not find something like that, 
> it seemed there was only a parser for the BLAST XML output.
> 
> Thanks in advance!
> 
> Ahmed
> 
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Joseph Landman, Ph.D
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