[BiO BB] Java API for BLAST?

[Ahmed Moustafa]

Hi Christoph,

I am going to try the first implementation (via HTTP/EBI), and will let 
you know how it will go.

BTW, I thought NCBI had some Java APIs but could not find, have you 
heard of that?
Thanks!

Ahmed

On 12/9/2005 9:39 AM, Dr. Christoph Gille wrote:

>Hi Ahmed,
>
>I have just findished one but need some more three days for documentation.
>It might already work for you.
>Please look at:
>http://www.charite.de/bioinf/strap/javadoc/charite/christo/interfaces/SequenceBlaster.html
>http://www.charite.de/bioinf/strap/Scripting.html
>You have three implementations:
> 1. via HTTP @ ebi
> 2. WU-Blast local
> 3. NCBI-Blast local
>
>Since Blast usually takes some sec the results are cached on HD.
>
>Please tell me if you need assistance.
>
>Christoph
>