[BiO BB] Orphan Protein

Martin Gollery marty.gollery at gmail.com
Wed Jul 20 16:11:10 EDT 2005

Yes, I have some that I have been working with- I will dump them to a
webserver and then drop you a line as to where they are.


On 7/20/05, Raj <rajkumar.bondugula at gmail.com> wrote:
> Hi all,
>       I  need some 'orphan proteins' to test my secondary structure
> prediction algorithm. By 'orphan protein', I mean those proteins that
> do not have significant sequence identity(>10%) with other known
> proteins.
>       Does any one know of a pre-compiled list of orphan proteins? or
> can any one suggest me a method to generate a list.
> Thanks in advance.
> Raj
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Martin Gollery
Associate Director
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330

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