[BiO BB] graph-theory-software
dmb at mrc-dunn.cam.ac.uk
Sun Jun 19 06:33:42 EDT 2005
On Sat, 18 Jun 2005, Iddo Friedberg wrote:
>GraphViz might be what you are looking for. It will mot take a binary
>matrix file as input (well, there is no real standard for those) but you
>can easily convert to GraphViz readable files. Their syntax is very
My favourite is JUNG (Java Universal Network and Graph Archetecture), but
again you probably have to change your graph format.
>Iddo Friedberg, Ph.D.
>The Burnham Institute
>10901 N. Torrey Pines Rd.
>La Jolla, CA 92037, USA
>Tel: +1 (858) 646 3100 x3516
>Fax: +1 (858) 646 3171
>Automated Protein Function Prediction Meeting, June 24, 2005
>On Sun, 19 Jun 2005, vijaya raj wrote:
>> i have a binary matrix file, representing a biological network.
>> is there any graph theory software that would allow me to draw the network, taking the binary matrix file as the input...
>> thanks in advance for sparing your time.
>> vijayaraj nagarajan
>> department of biological sciences
>> the university of southern mississippi
>> ms, usa
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