[BiO BB] profile search
pmr at ebi.ac.uk
pmr at ebi.ac.uk
Fri Jun 24 16:29:14 EDT 2005
Lily (l x yi) writes:
> Does anyone know any software that does profile (weight matrix) search? In
> this case, the input is the weight matrix, and the pgm would search
> through databank such as swissprot to find related sequences?
EMBOSS includes the "profit" program to do this. The profile/weight matrix
can be generated with the EMBOSS "prophecy" program or produced in a
compatible format by other programs.
The EMBOSS home page is http://emboss.sourceforge.net/
Hope this helps,
Peter Rice
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