[BiO BB] evaluating alignment algothythms

Dr. Christoph Gille christoph.gille at charite.de
Wed Nov 2 16:44:17 EST 2005

To compare different algorhythms for multiple sequence alignments
I need to compare the alignment outputs to a benchmark alignment.

Do programs exist that can take a computed alignment and compare it
to the "optimal" alignment and produce a score ?

Many thanks

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