[BiO BB] evaluating alignment algothythms

Boris Steipe boris.steipe at utoronto.ca
Wed Nov 2 17:59:57 EST 2005


Yes,

The reference database is BAliBASE and on the site you will find C  
source to compute the score.

http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/

regards,

Boris


On 2 Nov 2005, at 16:44, Dr. Christoph Gille wrote:

> To compare different algorhythms for multiple sequence alignments
> I need to compare the alignment outputs to a benchmark alignment.
>
> Do programs exist that can take a computed alignment and compare it
> to the "optimal" alignment and produce a score ?
>
> Many thanks
> Christoph
>
> _______________________________________________
> Bioinformatics.Org general forum  -   
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>




More information about the BBB mailing list