[BiO BB] evaluating alignment algothythms

Stefanie Lager stefanielager at gmail.com
Thu Nov 3 02:32:49 EST 2005

A graphical comparison of two multiple alignments can be done using the
AltAVisT tool http://bibiserv.techfak.uni-bielefeld.de/altavist/
  On 11/2/05, Dr. Christoph Gille <christoph.gille at charite.de> wrote:

> To compare different algorhythms for multiple sequence alignments
> I need to compare the alignment outputs to a benchmark alignment.
> Do programs exist that can take a computed alignment and compare it
> to the "optimal" alignment and produce a score ?
> Many thanks
> Christoph
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