[BiO BB] Interaction prediction Was: Re. Linear Bioinformatics workflow?

govind mk mkgovindis at yahoo.com
Tue Nov 8 22:44:51 EST 2005


Hi Nadeem

You could use the STRING website which also uses
genomic context based algorithms.

http://string.embl.de/

It has data of interacting proteins derived from
curation effort as well ... Data from Reactome and
HPRD have also been incorporated in it

-Govind



--- Boris Steipe <boris.steipe at utoronto.ca> wrote:

> The BIND database has a tool called BIND-BLAST (
> http://bind.ca/ 
> BINDBlast ) that allows you to search interaction
> partners by  
> sequence similarity. Of course, these so-called
> "interologs" are only  
> a hypothesis. On the other hand, in case an
> interaction between the  
> two proteins has been experimentally determined,
> BIND will tell you  
> that as well.
> 
> HTH
> 
> Boris
> 
> On 8 Nov 2005, at 05:14, V.Nadeem Ahmad wrote:
> 
> > Hi All,
> > I have a small question. I have two protein
> sequences . I want to  
> > know whether they interact or not. I dont have the
> structures of  
> > both. will be glad to have your opinion
> >
> > kind regards
> > Nadeem Ahmad
> > _______________________________________________
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