[BiO BB] Protein expression DB?

Siddhartha Basu basu at pharm.sunysb.edu
Tue Apr 11 13:19:45 EDT 2006

Harry Mangalam wrote:
> Hi All,
> I'm trying to create a small database for examining and correlating gene 
> expression and protein expression for a small number of species.  Gene 
> expression data is no problem to find, but protein expression data in a 
> manageable form is rare.  I'm concentrating on coli, cerevisiae, and mammals 
> for now.
> Besides the Open Proteome Database:
> http://apropos.icmb.utexas.edu/OPD/
> GEO:
> http://www.ncbi.nlm.nih.gov/projects/geo/query/browse.cgi?mode=samples&filteron=8&filtervalue=3
> and the Swissprot 2D gel database:
> http://www.expasy.org/ch2d/
> NCI has some half-finished web pages that claim that data is coming, but it 
> looks like it has been abandoned.:
> http://www3.cancer.gov/intra/lmp/jnw/Prot.htm
> are there any other obvious sources of public data available?
> Pointers to individual data sets would also be welcome.  MS/SEQUEST summaries 
> are especially welcome, but other text formats would also be good.
> Thanks in advance for your time & pointers.
Here is one



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