[BiO BB] Number of enzymes in each KEGG pathway

[Goel, Manisha]

Hi Gaou,
Thanks a lot for your reply...
-Manisha

-----Original Message-----
From: bio_bulletin_board-bounces+mag=stowers-institute.org at bioinformatics.org [mailto:bio_bulletin_board-bounces+mag=stowers-institute.org at bioinformatics.org] On Behalf Of Kazuharu Arakawa
Sent: Monday, April 10, 2006 12:52 PM
To: The general forum at Bioinformatics.Org
Subject: Re: [BiO BB] Number of enzymes in each KEGG pathway


Hi Samantha,

Also check out the KEGG API.
get_enzymes_by_pathway() will fit your purpose. http://www.genome.jp/kegg/soap/doc/keggapi_manual.html#label:76

-gaou

On 2006/04/11, at 4月11日火曜日2:45, Goel, Manisha wrote:

> Hi Samantha,
> Thanks a ton for the pointer. This helps a lot..
> -Manisha
> -----Original Message-----
> From: 
> bio_bulletin_board-bounces+mag=stowers-institute.org at bioinformatics.org [mailto:bio_bulletin_board-bounces+mag=stowers-institute.org at bioinformatics.org] On Behalf Of Samantha Fox
> Sent: Monday, April 10, 2006 12:27 PM
> To: The general forum at Bioinformatics.Org
> Subject: Re: [BiO BB] Number of enzymes in each KEGG pathway
>
> Hey,
> This might be helpful : ftp://ftp.genome.jp/pub/kegg/pathways/
> And then goto the specific organism you are interested in.
>
> ‾S
>
> On 4/10/06, Goel, Manisha <MAG at stowers-institute.org> wrote: Hi All,
>
> I am trying to do a simple analysis of a genome for which I have KEGG 
> maps.
> However, I want to compare the number of proteins for each pathway in the genome of our interest and in other organisms like human, fly and worms.
>
> Is there an easy way to calculate the number of "organism specific" 
> proteins known for each KEGG pathway ?
>
> Thanks,
> -Manisha
>
>
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