[BiO BB] Domain Prediction

Boris Steipe boris.steipe at utoronto.ca
Fri Apr 28 11:04:47 EDT 2006

If you want to compare your sequence against known domains, you can  
use RPS-Blast


or try a HMMER search against the SMART database




On 28 Apr 2006, at 05:09, Pooja Jain wrote:

> Hello everybody,
> I have sequenced a protein for which no structural signature can be  
> found in
> PDB.  I plan to identify domains in it. For this shall I BLAST it  
> against Pfam
> or some other database ? Ulternatively, can anyone suggest the most  
> accurate de
> novo or sequence similarity based domain prediction tool ?
> Thank you in advance.
> -Pooja
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