[BiO BB] Help with RMSD calculation

[Sourangshu Bhattacharya]

Hi,
You should try some of the protein structure comparison algorithm e.g. 
DALI or CE ...

HTH
Sourangshu

Sourangshu Bhattacharya
PhD Student,
Dept. of Computer Science & Automation,
IISc, Bangalore.

http://people.csa.iisc.ernet.in/sourangshu


On Tue, 1 Aug 2006, Raj wrote:

> Does anyone have a script or algorithm that can calculate the minimum
> RMSD if C-alpha co-ordinates of two protein fragments are given? I
> mean, the algorithm should rotate and translate the first set of
> co-ordinates until it results in minimum RMSD with the second set of
> points.
>
> Thank you,
> Raj
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