[BiO BB] Help with RMSD calculation

Sourangshu Bhattacharya sourangshu at csa.iisc.ernet.in
Wed Aug 2 02:19:34 EDT 2006

You should try some of the protein structure comparison algorithm e.g. 
DALI or CE ...


Sourangshu Bhattacharya
PhD Student,
Dept. of Computer Science & Automation,
IISc, Bangalore.


On Tue, 1 Aug 2006, Raj wrote:

> Does anyone have a script or algorithm that can calculate the minimum
> RMSD if C-alpha co-ordinates of two protein fragments are given? I
> mean, the algorithm should rotate and translate the first set of
> co-ordinates until it results in minimum RMSD with the second set of
> points.
> Thank you,
> Raj
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