[BiO BB] Help with RMSD calculation
sourangshu at csa.iisc.ernet.in
Wed Aug 2 02:19:34 EDT 2006
You should try some of the protein structure comparison algorithm e.g.
DALI or CE ...
Dept. of Computer Science & Automation,
On Tue, 1 Aug 2006, Raj wrote:
> Does anyone have a script or algorithm that can calculate the minimum
> RMSD if C-alpha co-ordinates of two protein fragments are given? I
> mean, the algorithm should rotate and translate the first set of
> co-ordinates until it results in minimum RMSD with the second set of
> Thank you,
> General Forum at Bioinformatics.Org - BiO_Bulletin_Board at bioinformatics.org
More information about the BBB