[BiO BB] Restriction sites frequencies in mouse genome

[Daniel Harari]

Genoway,

EMBOSS has a number of restriction enzyme analyses programs:
http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/nucleic_restriction_group.html
Try RESTRICT.

Also the GCG software package (Accelyris) offers some similar capabilities (but is commercial).  I hope that you are aware that genomic sequences between different mouse srtains can sometimes vary considerably.

Good luck.

Daniel

----- Original Message -----
From: Benoit VARVENNE <varvenne at genoway.com>
Date: Monday, August 28, 2006 14:16
Subject: [BiO BB] Restriction sites frequencies in mouse genome
To: bio_bulletin_board at bioinformatics.org

> Dear Members,
> 
> I am a new member of this mailing-list and i don't know if such 
> a post will
> draw the attention of anyone here. So excuse me in advance if my 
> subject is
> not appropriate.
> I am searching for a way to calculate restriction sites 
> frequency in mouse
> genome (so sequences from 6 to 13bp). I have already tried to do 
> so using
> blast (or blast-like) tools and configuring them as needed but 
> it gave no
> results, because of too numerous hits i think.
> 
> I would be very greatful if someone could help me on this topic.
> 
> Thanks a lot for your help,
> Best regards,
> 
> Benoît Varvenne,
> Bioinformatics pearson in charge,
> Genoway Lyon - France
> 
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