[BiO BB] flybase IDs to gene bank accession nos

[Ann Loraine]

Hello,

Maybe this will help...

Does FlyBase provide sequence data?

If you can get a mapping of FlyBase ids onto mRNA sequences, then you
can use blast to search against a database of RefSeq fruit fly mRNA
sequences.

Then it should be relatively easy to get Entrez gene ids from the
perfect-match RefSeq ids identified in the blast search.

-Ann

On 1/8/06, Liangyou Chen <liangyou at gmail.com> wrote:
> I am creating tools for such conversions.  But I don't know how to
> connect the FlyBase ID to GeneBank accession or entrez ID.  If you
> can show me an example how to do the conversion in detail, I will make a tool
> for you.
>
> Thanks.
>
> On 1/6/06, Rami Reddy.V <reddy_vram at yahoo.com> wrote:
> > Hello all,
> > I am looking for a tool to convert FlyBase IDs to Gene Bank accession or
> > entrez IDs, if anybody knows please let me know.
> > Thanks alot
> >
> >
> >
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--
Ann Loraine
Assistant Professor
Section on Statistical Genetics
University of Alabama at Birmingham
http://www.ssg.uab.edu
http://www.transvar.org