[BiO BB] Fasta file of KEGG pathways

forward at hongyu.org forward at hongyu.org
Thu Jan 19 20:19:14 EST 2006

I am wondering whether anyone has a downloable file containing all protein
sequences of KEGG pathway (e.g., in FASTA format)? I remember seeing it
somewhere on KEGG website, but I couldn't find it anymore.

Basically, I want to BLAST my query sequences against the file to find
out the pathway information of my sequences. I can't use the web
interface of KEGG directly because I have too many sequences to query. It
would be nice if I can download a local copy.


Hongyu Zhang, Ph.D.
Computational Biologist
Ceres Inc.
1535 Rancho Conejo Blvd
Thousand Oaks, CA 91320
Phone: (805)376-6504 ext 1204

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