[BiO BB] Fasta file of KEGG pathways

Ann Loraine aloraine at gmail.com
Thu Jan 19 21:07:18 EST 2006


This doesn't really answer your question..sorry!

However,  you might want to take a look at the Pathologic software
from Peter Karp's group at SRI.

It may have what you need.


Ann Loraine

On 1/19/06, forward at hongyu.org <forward at hongyu.org> wrote:
> I am wondering whether anyone has a downloable file containing all protein
> sequences of KEGG pathway (e.g., in FASTA format)? I remember seeing it
> somewhere on KEGG website, but I couldn't find it anymore.
> Basically, I want to BLAST my query sequences against the file to find
> out the pathway information of my sequences. I can't use the web
> interface of KEGG directly because I have too many sequences to query. It
> would be nice if I can download a local copy.
> Thanks!
> --
> Hongyu Zhang, Ph.D.
> Computational Biologist
> Ceres Inc.
> 1535 Rancho Conejo Blvd
> Thousand Oaks, CA 91320
> Phone: (805)376-6504 ext 1204
> _______________________________________________
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Ann Loraine
Assistant Professor
Section on Statistical Genetics
University of Alabama at Birmingham

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