[BiO BB] formatdb now requires .formatdbrc?

[Joe Landman]

Hi Amir



Amir Karger wrote:
> I'm seeing new behavior when I run formatdb:
>
> testportal:play/recip_blast/t2>formatdb -o T -i Hinf.faa -l stdout -p T -t
> blah
> 
> ========================[ Jan 27, 2006 11:40 AM ]========================
> Version 2.2.13 [Nov-27-2005]
> Started database file "Hinf.faa"
> NOTE: CoreLib [002.003] FileOpen(".formatdbrc","r") failed
> NOTE: CoreLib [002.003] FileOpen("/n/compbio/users/akarger/.formatdbrc","r")

   What happens if you do a

	touch ~/.formatdbrc

for each user (as that user so the permissions are not munged) and

	touch .formatdbrc

in your job script?  Does this help eliminate those messages?

Joe


-- 
Joseph Landman, Ph.D
Founder and CEO
Scalable Informatics LLC,
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