[BiO BB] sgi altix blastpgp

[manjari g]

I am research student at Bioinformatics Centre, University of Pune,
Pune (INDIA). We have 16 processor SGI-Altix in the department. I have
downloaded HTC-Blast propack 3 from SGI website. Normal blast works
fine. however for blastpgp (psi-blast) i want to store PSSM files
using -Q option. I am unable to create separate outfiles in the manner
 it does using out_dir option. Please help me.
With regards
Sunitha Manjari
Bioinformatics Centre
Unviersity of Pune
Pune -INDIA