[BiO BB] sgi altix blastpgp

Martin Gollery marty.gollery at gmail.com
Thu Mar 9 13:29:54 EST 2006

I don't know what the trouble is, but why are you using -Q anyway? If you
want to use the PSSM for anything, like an RPS-BLAST database, for example,
you should use the -C option instead.


On 3/8/06, manjari g <smanjari at gmail.com> wrote:
> I am research student at Bioinformatics Centre, University of Pune,
> Pune (INDIA). We have 16 processor SGI-Altix in the department. I have
> downloaded HTC-Blast propack 3 from SGI website. Normal blast works
> fine. however for blastpgp (psi-blast) i want to store PSSM files
> using -Q option. I am unable to create separate outfiles in the manner
> it does using out_dir option. Please help me.
> With regards
> Sunitha Manjari
> Bioinformatics Centre
> Unviersity of Pune
> Pune -INDIA
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Martin Gollery
Associate Director
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
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