[BiO BB] Parameter -e blastpgp/PSI-BLAST

[Martin Gollery]

-e sets the threshold expectation value for alignments in the final output.
-h is the threshold for inclusion into the PSSM. I believe the default
setting for -e is 10, which is extremely lenient.


Marty

On 5/2/06, Martin Heusel <mheusel at gmail.com> wrote:
>
> Hi everyone,
>
> i didnt find an explanation for what the blastpgp parameter -e is for.
> -h is the threshold for multipass searching but what can one do with
> -e? Can anyone tell me?
>
> Thanks a lot
>
> bye
>
> Martin
>
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--
--
Martin Gollery
Associate Director
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
775-784-7042
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